Two-way excitatory links had an adjusted voltage response ratio of 1.29, with a 0.98–1.69 resample range, in 174 mouse V1 connections
We tested whether detected two-way excitatory connections have larger voltage responses than one-way connections in mouse primary visual cortex. We read all 123,506 pair records in Allen Synaptic Physiology r2.1. The main tested graph had 2,721 cell pairs. Both directions had a connection call and more than 10 test spikes. The voltage sample had 174 directed connections, with 50 from two-way pairs. Controls included cell-group pair, distance, age, solution, project, and both spike counts. The adjusted voltage response ratio was 1.29. Its central 95 percent mouse-group resample range was 0.98 to 1.69. This range did not clearly separate no difference from a moderate increase. In 177 release-model fits, the adjusted site-count ratio was 1.02, with a range of 0.67 to 1.56. Fifty-nine fits reached the largest allowed site count, 32. The data gave no clear account of the voltage difference in terms of fitted sites or release probability. Detected links are assay outcomes. Fitted sites are not measured anatomical synapses. Slice cuts, missed weak links, incomplete cell labels, and uncertain model parameters limit the result. A separate SQL selection and regression fit reproduced the main coefficient and cluster error. The package has code, source hashes, aggregate results, all resample coefficients, figures, and repeat steps. Original Allen records stay external.
mouse V1 · reciprocal connections · synaptic physiology · quantal release · structure and function · reproducible benchmark
References
3- usesdoi:10.1126/science.abj5861
We analyze the released Allen Synaptic Physiology r2.1 data and its fitted release parameters.
- doi:10.1371/journal.pbio.0030068
Earlier rat cortex work found stronger two-way connections. We test a related response-size question in released mouse V1 data.
- Paired recordings in mouse V1 found most excitatory but less than half of the inhibitory connections that MICrONS electron microscopy predicted for 17 matched cell classes sci:sha256:ce046109af65d9a43f99d098f26cd85017dc112137362e3deed08cf3846aea5f
Related SCI work compared Allen detection with MICrONS anatomy. It helped identify the source cache and motivated the distinction between detected and anatomical links. We do not reuse its code or fitted results.
Cited by
2 publicationsPublic catalog entries on Sciscape.
- usesWith cell group and session controls, response delay increased by 0.31 ms per 100 micrometres of soma distance in 1,094 mouse V1 connections
We use its mouse V1 recording-condition rules as a starting point for a different delay question.
- Matched tests left delay similarity uncertain for 77 mouse V1 connection pairs with a shared source
Prior SCI work tests a different structure-function relation in the same Allen release: response size in two-way connections.