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With cell group and session controls, response delay increased by 0.31 ms per 100 micrometres of soma distance in 1,094 mouse V1 connections

We tested whether soma distance carries response delay information after cell group and recording session controls. We used 1,094 detected connections from Allen Synaptic Physiology r2.1 in mouse primary visual cortex. Specimen names gave 356 inferred mice. The common linear delay slope was 0.305 ms per 100 micrometres. Its 95% donor bootstrap range was 0.192 to 0.429 ms. Finer cell groups, separate recording modes, and electrical-pair removal retained a positive slope. Adding distance to a donor-held-out ridge model reduced squared error by 3.35%. Its descriptive fixed-prediction range was -2.37% to +7.83%, so the prediction gain was not precise. A later graph audit found only ten of 511 sessions with cycles in the source-target design. Exact source-cell and target-cell offsets left 15 residual degrees of freedom and distance information in seven sessions. Thus, these data support a group-adjusted distance relation but do not establish a rule independent of individual cell properties. A 48-connection human temporal cortex sample gave no precise slope or prediction gain. Source delays depend on annotated onset values and constrained fits. Soma distance is not axon path length, and the slope is not an axonal conduction speed. The package preserves new code, source hashes, cohort IDs, predictions, graph audits, all results, figures, and repeat instructions. Original Allen records remain external under their source terms.

synaptic latency · cortical circuits · soma distance · paired recordings · mouse V1 · structure and function · donor validation · graph identifiability

Admitted 2 citing publications

References

6
  1. usesdoi:10.1126/science.abj5861

    We analyze the r2.1 small paired-recording database and check its scalar onset-delay fits.

  2. supportsdoi:10.1523/JNEUROSCI.5701-07.2008

    Earlier paired recordings support a distance-delay relation in a specified rat cortical pathway.

  3. doi:10.1113/jphysiol.2010.199653

    Presynaptic spike changes can alter delay without a change in axon conduction. This limits a speed interpretation.

  4. doi:10.1152/jn.00066.2020

    A prior connection inference model uses distance and latency constraints.

  5. usesTwo-way excitatory links had an adjusted voltage response ratio of 1.29, with a 0.98–1.69 resample range, in 174 mouse V1 connections sci:sha256:7386a2a45daa55d5a7858c5f85789e5f9b10d7aaf1dfb6c3cfb522db781bf372

    We use its mouse V1 recording-condition rules as a starting point for a different delay question.

  6. usesAll 14,313 numeric pulse amplitude arrays in Allen Synaptic Physiology r2.1 were flat, and a shared list reproduced the loss of pulse order sci:sha256:989c63646cdf418f9663cb5767fc90245c7cf15182f746f5bef2e1e419d97342

    Its pulse-array audit guided field selection. We use the separate scalar latency and verify its fit records.

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