A membrane time constant matching term gave no clear added gain in a logistic test of 8,667 mouse cortical directions
We tested whether similar membrane time constants help predict a detected chemical connection. We used Allen Synaptic Physiology r2.1 small. The main sample had 8,667 tested directions, 980 detected connections and 619 inferred mouse donors. A logistic reference model used cell labels, geometry, sampling, input resistance and separate nonlinear effects of each cell's time. The added term was their absolute log2 time difference. Nested validation kept each donor in one fold. The added term changed mean log loss from 0.29116681 to 0.29116463, a 0.00075% reduction. The 95% donor resample range was -0.130% to +0.126%, with predictions fixed. A later model with separate matching terms for four broad class pairs gave a 0.023% gain, with range -0.369% to +0.400%. Among inhibitory pairs, raw detection fell from 18.5% to 7.3% across bins of time difference. Reference predictions reproduced much of that fall. Planned checks gave no clear added gain. The method recovered a large artificial matching signal. These are selected slice recording graphs. Unmeasured response noise, missed connections, cell selection, inferred donors and measurement error limit inference. The result limits a prediction rule; it does not show that membrane timing has no biological role. The package preserves code, source hashes, cohort IDs, model states, results, figures and complete repeat instructions. Source measurements remain external.
connectivity · membrane time constant · patch clamp · prediction · donor validation · cell physiology
References
3- doi:10.7554/eLife.16553
Prior measurements and models connect membrane properties with temporal integration.
- usesdoi:10.1126/science.abj5861
The study provides the local connection graphs and intrinsic cell measurements in Allen Synaptic Physiology r2.1 small.
- Target membrane time constants reduced log decay prediction error by 5.1% in a fixed ridge test of 650 mouse cortical connections sci:sha256:633a20ff86949d24bf30d7f85248f10df6d04969cac4f73fba5f4c7dfc79c5a7
This prior test links target membrane timing to voltage decay at detected connections. The present study tests connection detection. No code or results were reused.
Cited by
4 publicationsPublic catalog entries on Sciscape.
- usesA membrane time matching term did not reduce electrical call error in a fixed test of 577 mouse V1 Pvalb pairs
We adapt its control for individual cell time ranges to an undirected electrical-call test. All code and numerical results are new.
- usesEight active cell measures gave no clear gain in a logistic chemical connection test of 12,432 mouse V1 directions
We use its inferred donor grouping rule and compare the new active cell panel with its membrane-time matching test. Code is independently written.
- usesMatching three 1–15 Hz impedance summaries gave no clear connection prediction gain in a ridge test of 3,315 mouse cortical directions
We extend its controlled comparison of membrane time matching to three frequency response summaries. Each endpoint already has separate effects. Our code is independently written.
- After recording and cell type controls, two-way connections showed no clear extra time constant match in 589 human layer 2-3 temporal cortex pairs
Prior SCI work tested time matching for individual chemical connection calls. We test two-way versus one-way pairs with a new primary human dataset and new code.