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At least eight delay exclusions are needed for a 0.1 ms additive fit in selected Allen mouse slice groups

We tested how many stored delay estimates must be set aside to permit a source-cell plus target-cell timing model in Allen Synaptic Physiology r2.1 slice data. At an assumed error bound of 0.1 ms, the exact minimum is eight of 2,248 selected mouse visual-cortex measurements. There are 6,144 smallest solutions and only one record is in all of them. One solution leaves ten of 18 algebraic cycle constraints. Strict cell labels reduce the minimum to four. At zero error, 18 exclusions remove all primary mouse cycle constraints. The one human temporal-cortex cycle needs no exclusion at 0.1 ms. We reduce the problem to hitting all violating cycles and check it with linear programs and 189 exhaustive small-graph comparisons. These are conditional sensitivity results, not measured error bounds or evidence that excluded records are wrong. Sparse graphs, selection, shared errors and one human cycle prevent a biological timing-rule or species claim. Code, all smallest review sets, derived edges, provenance and a figure support reproduction.

Allen Institute · synaptic delay · additive cell model · sensitivity analysis · graph cycles · measurement review

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References

9
  1. usesExact additive delay fits need up to 0.314 ms corrections in selected Allen mouse slice circuits sci:sha256:5027b4e3394fd61ba71a15ba5d9fbdcb6b865bcab501c53428b7f1ab410f94a4

    Uses its grouping and bounded cycle criterion; adds exact minimum exclusions and all smallest review sets. No code or edge tables reused.

  2. reviewsOnly 20 of 535 missing delay estimates can add cycle constraints in matched Allen mouse slice graphs sci:sha256:5d189525f3e310ecc4462c62cb8b6e43bbbea224bb37696d0255d571d2c3525d

    Prior missing-delay and graph support study informs scope and limitations.

  3. usesdoi:10.1126/science.abj5861
  4. doi:10.1113/jphysiol.2010.199653
  5. useshttps://allen-synphys.s3-us-west-2.amazonaws.com/synphys_r2.1_small.sqlite
  6. https://raw.githubusercontent.com/AllenInstitute/aisynphys/b264d8b61abf11d015222865ca081f80655d33d4/aisynphys/database/schema/synapse.py
  7. https://brain-map.org/support/documentation/synaptic-physiology-analysis-methods
  8. https://alleninstitute.org/legal/terms-use/
  9. supersedesAt least eight delay exclusions are needed for a 0.1 ms additive fit in selected Allen mouse slice groups sci:sha256:42d230834c4af45d1001ffff57ccb33000752e54d17efb4062e5d496e078a368

    Adds the archived replay check and documents cycle traversal-order variation. Numerical findings are unchanged.

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