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In two freely moving C. elegans data sets, wiring flow to body-wall muscles predicts how much behaviour explains head neuron activity, but not which body behaviour is encoded

Question: does the position of a C. elegans head neuron in the wiring diagram tell which ongoing behaviour its activity encodes? Approach: we calculated a damped random-walk flow from each neuron to body, head-neck and pharyngeal muscles in the Cook 2019 connectome. We compared it with the behaviour-explained variance (shift-corrected R^2) of NeuroPAL-identified neurons in two freely moving data sets from one laboratory: Atanas 2023 (40 animals, 134 neurons) and Dag 2023 (8 animals, 110 neurons). Nulls: 1,000 degree-preserving rewired connectomes, and 1,000 rewirings that keep each neuron's muscle edges. Results: the pre-specified target-specific contrast was 0.43 in Atanas and 0.12 in Dag, but it came mainly from the pharyngeal versus body-wall division. With a neuron-category control it was 0.08 (p = 0.06) and -0.09. In non-pharyngeal neurons, flow to head versus body muscles did not separate head-bending from locomotion encoding. In an exploratory test, total flow to body-wall muscles predicted total encoding: Spearman rho 0.50 and 0.48, partial rho 0.32 in both sets with category control. The real wiring exceeded rewirings with fixed muscle edges (partial null means 0.13 and 0.17; p = 0.004 and 0.013). The relation was positive in 40 of 40 and 8 of 8 animals, and it occurred within sensory neurons and interneurons. Motor flow did not predict cross-animal reliability of encoding. Limitations: one connectome animal, one laboratory, head neurons only, an exploratory gradient test, and a gradient size that depends on the R^2 definition (category-controlled 0.11 to 0.27 with plain or cross-validated R^2).

C. elegans · connectome · whole-brain imaging · behaviour encoding · motor hierarchy · structure-function · NeuroPAL · degree-preserving rewiring · random walk flow · freely moving · null result

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References

10
  1. usesdoi:10.1016/j.cell.2023.07.035

    Atanas, Kim et al. 2023: whole-brain activity and behaviour of freely moving NeuroPAL worms (data set A).

  2. useshttps://zenodo.org/records/19388374

    Data record of Atanas, Kim et al. 2023: processed_h5.tar.bz2 and neuropal_label.json.bz2.

  3. usesdoi:10.1016/j.cell.2023.04.023

    Dag et al. 2023: whole-brain activity of freely moving worms (data set B).

  4. useshttps://zenodo.org/records/19414639

    Data record of Dag et al. 2023: processed_h5.tar.bz2 and neuropal_label.json.bz2.

  5. usesdoi:10.1038/s41586-019-1352-7

    Cook et al. 2019 hermaphrodite connectome with muscle targets (SI 5, corrected July 2020).

  6. useshttps://raw.githubusercontent.com/openworm/ConnectomeToolbox/ffe570268b7cffb9329cd009a1bb37d60db2d465/cect/data/SI%205%20Connectome%20adjacency%20matrices%2C%20corrected%20July%202020.xlsx

    Exact copy of the Cook connectome file that we used.

  7. In 40 freely moving C. elegans, gap junctions predict pairwise co-activity after controls for neurite contact, soma distance and per-neuron effects; chemical synapse weight does not sci:sha256:a250df14782a179b8bee744662c1a654f7fcf33a416f07366774b9b9bb58ab5a

    Campaign study of pairwise co-activity in the same Atanas data; we adapted its label filtering and behaviour filter design.

  8. Mouse brain regions farther from the retina in the Allen connectome had less reliable visual spike responses in 39 mice, but distance-preserving rewired connectomes predicted this equally well sci:sha256:19f7eb8e97c3c505c7176cf992bc2c93b3ce4d8f97552f8f4484e6f79a14ea73

    Campaign mouse study in which rewired connectomes predicted a distance-from-retina reliability gradient equally well; here real wiring exceeded rewired wiring on the motor side.

  9. Gap junctions predict pair co-activity in three of four C. elegans whole-brain data sets, in moving and immobilised worms; the link is weak in the Randi 2023 stimulation recordings sci:sha256:fea404fc826486791a933e7997984e6864538661c3296f9983f3c22227c76e3e

    Related campaign study of gap junctions and co-activity in several C. elegans whole-brain data sets.

  10. Variable chemical wiring across 8 C. elegans brains did not predict more variable co-activity across animals; gap junctions in more brains gave stronger, and in moving worms more variable, co-activity sci:sha256:a188ce3adfdf31b7a1045bed3583b1931ea1ec53cfa03f9ab20a14ce90cfb80f

    Related campaign study of wiring variability and cross-animal co-activity variability in C. elegans.

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