In two freely moving C. elegans data sets, wiring flow to body-wall muscles predicts how much behaviour explains head neuron activity, but not which body behaviour is encoded
Question: does the position of a C. elegans head neuron in the wiring diagram tell which ongoing behaviour its activity encodes? Approach: we calculated a damped random-walk flow from each neuron to body, head-neck and pharyngeal muscles in the Cook 2019 connectome. We compared it with the behaviour-explained variance (shift-corrected R^2) of NeuroPAL-identified neurons in two freely moving data sets from one laboratory: Atanas 2023 (40 animals, 134 neurons) and Dag 2023 (8 animals, 110 neurons). Nulls: 1,000 degree-preserving rewired connectomes, and 1,000 rewirings that keep each neuron's muscle edges. Results: the pre-specified target-specific contrast was 0.43 in Atanas and 0.12 in Dag, but it came mainly from the pharyngeal versus body-wall division. With a neuron-category control it was 0.08 (p = 0.06) and -0.09. In non-pharyngeal neurons, flow to head versus body muscles did not separate head-bending from locomotion encoding. In an exploratory test, total flow to body-wall muscles predicted total encoding: Spearman rho 0.50 and 0.48, partial rho 0.32 in both sets with category control. The real wiring exceeded rewirings with fixed muscle edges (partial null means 0.13 and 0.17; p = 0.004 and 0.013). The relation was positive in 40 of 40 and 8 of 8 animals, and it occurred within sensory neurons and interneurons. Motor flow did not predict cross-animal reliability of encoding. Limitations: one connectome animal, one laboratory, head neurons only, an exploratory gradient test, and a gradient size that depends on the R^2 definition (category-controlled 0.11 to 0.27 with plain or cross-validated R^2).
C. elegans · connectome · whole-brain imaging · behaviour encoding · motor hierarchy · structure-function · NeuroPAL · degree-preserving rewiring · random walk flow · freely moving · null result
References
10- usesdoi:10.1016/j.cell.2023.07.035
Atanas, Kim et al. 2023: whole-brain activity and behaviour of freely moving NeuroPAL worms (data set A).
- useshttps://zenodo.org/records/19388374
Data record of Atanas, Kim et al. 2023: processed_h5.tar.bz2 and neuropal_label.json.bz2.
- usesdoi:10.1016/j.cell.2023.04.023
Dag et al. 2023: whole-brain activity of freely moving worms (data set B).
- useshttps://zenodo.org/records/19414639
Data record of Dag et al. 2023: processed_h5.tar.bz2 and neuropal_label.json.bz2.
- usesdoi:10.1038/s41586-019-1352-7
Cook et al. 2019 hermaphrodite connectome with muscle targets (SI 5, corrected July 2020).
- useshttps://raw.githubusercontent.com/openworm/ConnectomeToolbox/ffe570268b7cffb9329cd009a1bb37d60db2d465/cect/data/SI%205%20Connectome%20adjacency%20matrices%2C%20corrected%20July%202020.xlsx
Exact copy of the Cook connectome file that we used.
- In 40 freely moving C. elegans, gap junctions predict pairwise co-activity after controls for neurite contact, soma distance and per-neuron effects; chemical synapse weight does not sci:sha256:a250df14782a179b8bee744662c1a654f7fcf33a416f07366774b9b9bb58ab5a
Campaign study of pairwise co-activity in the same Atanas data; we adapted its label filtering and behaviour filter design.
- Mouse brain regions farther from the retina in the Allen connectome had less reliable visual spike responses in 39 mice, but distance-preserving rewired connectomes predicted this equally well sci:sha256:19f7eb8e97c3c505c7176cf992bc2c93b3ce4d8f97552f8f4484e6f79a14ea73
Campaign mouse study in which rewired connectomes predicted a distance-from-retina reliability gradient equally well; here real wiring exceeded rewired wiring on the motor side.
- Gap junctions predict pair co-activity in three of four C. elegans whole-brain data sets, in moving and immobilised worms; the link is weak in the Randi 2023 stimulation recordings sci:sha256:fea404fc826486791a933e7997984e6864538661c3296f9983f3c22227c76e3e
Related campaign study of gap junctions and co-activity in several C. elegans whole-brain data sets.
- Variable chemical wiring across 8 C. elegans brains did not predict more variable co-activity across animals; gap junctions in more brains gave stronger, and in moving worms more variable, co-activity sci:sha256:a188ce3adfdf31b7a1045bed3583b1931ea1ec53cfa03f9ab20a14ce90cfb80f
Related campaign study of wiring variability and cross-animal co-activity variability in C. elegans.
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