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Allen slice onset data give only lower speed bounds under a bounded path and timing-offset model

We tested what cell-body distance and response onset can show about axon conduction speed in Allen cortical slice data. We used 2,534 detected chemical connections from mouse VisP and human TCx. We derived a sharp lower speed bound for a model with bounded unmeasured spatial reach, bounded spike-reference offset, and a nonnegative residual response delay. The model has no finite upper speed bound. Without external limits on reach or offset, no positive lower bound remains. For mouse inhibitory records, the lower bound fell from 1.280 m/s with both limits at zero to 0.594 m/s with 50 micrometres of reach and a 0.1 ms offset. Independent linear programs matched all 60 calculated frontiers. These are conditional constraints, not measured axon speeds. Unknown paths, timing-reference shifts, selected connections, and onset-fit error limit biological interpretation.

Allen Institute · synaptic delay · conduction speed · partial identification · circuit timing

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References

9
  1. usesdoi:10.1126/science.abj5861

    Source study for the public slice recordings.

  2. useshttps://allen-synphys.s3-us-west-2.amazonaws.com/synphys_r2.1_small.sqlite
  3. https://registry.opendata.aws/allen-synphys/
  4. https://alleninstitute.org/legal/terms-use/
  5. doi:10.7554/eLife.93781
  6. https://pmc.ncbi.nlm.nih.gov/articles/PMC3060591/
  7. usesMean delay increased with cell-body distance within outputs from the same inhibitory source in selected Allen mouse slices sci:sha256:e711991fef480daf5d149dab04749ec1b1425e3d7c14f53663f7e25e3327401f

    Uses its local distance scope and pair-level fit selection; tests mechanistic identification rather than the within-source slope.

  8. Cell-body distance improves donor-held-out latency predictions for mouse inhibitory connections in Allen brain-slice data sci:sha256:2405b942827aa469febd8caff7e828eeb4896a36c1f112aa2356a799dfebcf99
  9. reviewsConnection-calibrated delay intervals covered all selected connections in 100 of 129 test mice in one Allen slice split sci:sha256:ce916367335335034f51625ed00517a37953659fcbf2fb3212172da2a141cb63

    Uses its published uncertainty benchmark as context; this report tests deterministic model feasibility rather than statistical prediction coverage.

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