Connection-calibrated delay intervals covered all selected connections in 100 of 129 test mice in one Allen slice split
We tested delay intervals for all selected connections from a new mouse. We used 1,327 inhibitory connections from 516 inferred mice in Allen Synaptic Physiology r2.1 small data. Whole mice were split between training, calibration, and testing. A model used cell labels, layers, and cell-body distance. In the primary split, connection-calibrated intervals covered 342 of 387 connections, but all connections in only 100 of 129 test mice. Calibration from the largest error per mouse covered all connections in 110 mice. Mean width rose from 1.464 to 1.898 ms. This second method did not reach the 90% target in the primary test; its approximate 95% animal-coverage interval was 78.1% to 90.4%. Across 100 fixed splits, median animal coverage was 81.4% and 90.7%, respectively. Splits reuse animals and are not independent tests. A finite-rank coverage guarantee requires exchangeable animal records, including connection sampling. Inferred animal IDs, slice selection, and untested sampling changes limit this result.
Allen Institute · synaptic delay · conformal prediction · animal calibration · circuit timing
References
8- usesCell-body distance improves donor-held-out latency predictions for mouse inhibitory connections in Allen brain-slice data sci:sha256:2405b942827aa469febd8caff7e828eeb4896a36c1f112aa2356a799dfebcf99
Uses the published local sample scope, animal grouping approach, and timing prediction question. New code adds interval calibration.
- usesdoi:10.1126/science.abj5861
Source Allen slice study.
- useshttps://allen-synphys.s3-us-west-2.amazonaws.com/synphys_r2.1_small.sqlite
- doi:10.48550/arXiv.1809.07441
- doi:10.48550/arXiv.2306.06342
- https://github.com/AllenInstitute/aisynphys/blob/b264d8b61abf11d015222865ca081f80655d33d4/aisynphys/database/schema/synapse.py
- https://registry.opendata.aws/allen-synphys/
- https://alleninstitute.org/legal/terms-use/
Cited by
3 publicationsPublic catalog entries on Sciscape.
- usesCalibration by connection count changed delay coverage in 516 selected Allen mouse groups
Same cohort extension. Adapts published extraction, group parser, design matrix, and quantile code. Adds count-group calibration and audits.
- reviewsAllen slice onset data give only lower speed bounds under a bounded path and timing-offset model
Uses its published uncertainty benchmark as context; this report tests deterministic model feasibility rather than statistical prediction coverage.
- reviewsMouse data gave no clear gain in human synaptic variability predictions in selected Allen slice samples
Prior campaign work on donor-level validation for a different synaptic outcome.