With cell and lobule input counts fixed, 40 released mouse cerebellar cell maps showed no excess of four-zone convergence
We tested whether input from all four cerebellar zones was an excess pattern after connection counts were fixed. We used a public binary map of six lobules and 40 cerebellar nuclear cells from Gruver et al. (2024). Exact counting kept each cell's number of connected lobules and each lobule's number of target cells. Three cells had all four zones. The exact reference mean was 3.3365. Its central 95% range was 1 to 5, and its inclusive upper tail was 0.78895. Assigning lobule IX always to posterior also gave no excess. A secondary score counted co-input in III with IV/V and VIII with IX. The observed score was 14, versus an exact fixed-margin mean of 8.4001. Its sampled upper tail was 0.00038. An added control also fixed total co-input in neighboring lobules. It raised the score mean to 11.7838 and the upper tail to 0.07812, with Monte Carlo standard error 0.00164. The binary map matches both public exports. It omits lobule II, has no linked animal IDs, and differs from the source 41-cell summary. The result covers the released subset and the stated graph references. It does not show random wiring or an absence of cross-zone integration. Exhaustive checks, two samplers, and a clean offline repeat passed. The package preserves code, public source tables, exact counts, all reference draws, figures, provenance, and repeat instructions.
cerebellum · Purkinje cells · functional connectivity · convergence · fixed degree · network motifs · exact counting · structure and function · reproducible research
References
4- usesdoi:10.1038/s41467-024-49339-1
We use the public source workbook and the pinned GitHub binary input map. We test the released 40-cell subset and preserve its differences from the source summary.
- usesdoi:10.1038/ncomms5114
We use row trades to sample binary tables with fixed row and column totals. Exact counting and a switch sampler supply independent checks.
- supportsdoi:10.1103/PhysRevE.91.042812
The uniformity proof supports the stationary reference for the row-trade sampler.
- usesFixed cell input and output counts forced all seven motifs in six mature mouse CA3 recordings sci:sha256:5afa4e83be0f3b1b17550d5edf02d9a69acc7f043f667ace64500df38e076388
This prior SCI study motivated the check of motif counts at fixed cell counts. We use different data and new code. We read and verified the publication.
Cited by
1 publicationPublic catalog entries on Sciscape.
- usesDendrite orientation gave negative linear slopes for inhibitory rise time within six mouse cerebellar cells
Its source-workbook audit helped locate the source data. We test a different sheet and use new code.