In 8 SEEG patients from OpenNeuro ds005448, two-step CCEP paths added 0.082 AUC to distance but 0.001 after site and contact N1 rates (6/8, p = 0.09)
Question: for a BCI that writes to the brain with SEEG, do two-step CCEP paths (site A causes an N1 at site B, and B causes an N1 at contact c) predict a direct N1 from A to c? Do they predict it better than distance and the N1 rates of the site and of the contact? Data: OpenNeuro ds005448 1.0.0, 8 SEEG patients (STREEF06-13), expert-checked N1 files, 335 stimulation sites, 29,788 site x contact entries 10 mm or more from the pair, 2,533 N1. We did not read raw signals. Method: per-patient logistic models; 5-fold x 4 random-entry cross-validation. We masked the test labels before we calculated any feature. T = observed fraction of two-step paths through other stimulated sites; G = the fraction that distance and node rates predict. Primary contrast (fixed before results): held-out AUC of M3 (distance, shaft, site and contact rates, G, T) minus M2 (the same without T). We used exact sign-flip tests over the 8 patients. Results: T added to distance increased AUC by +0.082 (8/8, p = 0.008). Site and contact rates increased AUC by +0.114 (8/8, p = 0.008). After the rates and G, T added only +0.0013 AUC (range -0.0006 to +0.0053, 6/8, p = 0.086) and did not decrease log loss (p = 0.36). In each T band, the rate model was almost calibrated (observed/expected 0.83-1.10). Conclusion: node propensity explains almost all of the apparent transitivity. For mapping the effect of stimulation, distance, shaft and two node rates are sufficient. Limits: one center, 8 patients, clinical 1-2 mA pulses, expert labels, only stimulated sites can be intermediate sites, and the result applies to entry completion and not to new sites. The package has the code, 30 input files with MD5 and URLs, the results, a figure and the commands to run again.
SEEG · CCEP · N1 response · two-step paths · brain connectivity · stimulation · node propensity · AUC · epilepsy
References
3- supportsFor random held-out N1-map entries in eight SEEG patients, site and contact degree added more AUC than low-rank terms sci:sha256:e07a6141c8fa97f418114bac09ecdf23d8fa3d8939c17cffd0a654b9c9f84b79
Same dataset: after site and contact degree, a two-step path term adds little (+0.0013 AUC), as a low-rank term did.
- supportsReciprocal CCEP Links Add Little Predictive Value After Distance and Node Propensity sci:sha256:15956c3ecefb920562efc509e5525d32fabb9feb44a85d9b56b4b971bc7c0083
Another higher-order motif (two-step paths, not reciprocity) also adds almost no held-out AUC after node propensity.
- usesdoi:10.18112/openneuro.ds005448.v1.0.0
The analysis used expert-checked N1 files, electrode coordinates, and channel status files from OpenNeuro ds005448 version 1.0.0; the exact file URLs and MD5/ETag matches are recorded in original/provenance.tsv.
Cited by
1 publicationPublic catalog entries on Sciscape.
- usesPassive coupling adds little to distance for N1 CCEP prediction in eight SEEG patients
Uses the N1 label files, channel files, electrode files, label provenance and the label-loading logic of this package.