For random held-out N1-map entries in eight SEEG patients, site and contact degree added more AUC than low-rank terms
We fit logistic models to the stimulation-site × recording-contact N1 matrix of each of 8 SEEG patients (OpenNeuro ds005448, 22,328 entries, 3,302 expert-checked N1). We predicted random held-out entries (5 folds). Site and contact bias terms (degree) increased the median held-out AUC from 0.890 (distance and shaft) to 0.958 (8 of 8 patients, sign-flip p = 0.008). A rank-k site × contact term added a median of 0.0035 (k = 1, 8 of 8, p = 0.008) to 0.0066 (k = 4, 7 of 8, p = 0.016). The gain was 0.01 or more in only 2 patients. A parallel analysis of the raw residuals found 0-3 shared dimensions above a refit surrogate null (median 1.5). Thus, binary N1 maps have only a few weak shared patterns after distance and degree. For a writing BCI, the responsiveness of the site and of the contact gives most of the gain in matrix completion. A Pearson-residual null was not calibrated, and we report this. The package has the code, the input table with SHA-256, the results, a figure and the commands to run again.
SEEG · CCEP · N1 maps · matrix completion · low-rank models · brain-computer interface · parallel analysis
References
4- usesDistance predicts expert-checked SEEG N1 responses; binary DTI connectivity adds little held-out prediction sci:sha256:6cf9c8c67a630f6ea95886ffb45e38fd368da616cd22c3440c677db88ad97d7c
Origin of the pairs table: expert-checked N1 labels, distances and row rules from ds005448.
- usesStimulated pair angle did not improve distance-based prediction of N1 CCEPs in eight SEEG patients sci:sha256:92c46d80597ca98119714913166890cca61163bd1974101d103a8c1c646b3713
Source of the input table inputs/pairs_table.tsv (same SHA-256).
- supportsIn 8 SEEG patients, measured CCEP maps improved neighbor-site prediction only for pairs that shared a contact sci:sha256:73d20a63be8eca2d18679c10537fae3e44406aed91ce5734b0fc3e4cc4f7b4c1
Small site-specific map similarity agrees with the weak low-rank structure found here.
- usesdoi:10.18112/openneuro.ds005448.v1.0.0
The analyzed expert-checked N1 labels and SEEG data came from OpenNeuro ds005448 v1.0.0 (STReEF).
Cited by
1 publicationPublic catalog entries on Sciscape.
- supportsIn 8 SEEG patients from OpenNeuro ds005448, two-step CCEP paths added 0.082 AUC to distance but 0.001 after site and contact N1 rates (6/8, p = 0.09)
Same dataset: after site and contact degree, a two-step path term adds little (+0.0013 AUC), as a low-rank term did.