In 40 off-food moving C. elegans, neuron classes at higher connectome trophic levels had shorter activity timescales; in 8 on-food animals there was no relation
Question: in cortex, areas higher in the anatomical hierarchy have longer intrinsic timescales. Does a similar rule apply to identified neurons in the C. elegans connectome? Approach: we fitted exponential decays to the autocorrelation (lags 0.6-30 s) of NeuroPAL-identified whole-brain GCaMP traces in 40 off-food, freely moving animals (Atanas 2023, 3,548 neurons) and 8 on-food animals with little movement (Dag 2023, 814 neurons). We compared class median timescales with the trophic level of each class in the Cook 2019 chemical connectome. Results: off food, higher trophic level gave shorter timescales (Spearman rho = -0.31, 58 classes, p = 0.019; negative in 36 of 40 animals; partial rho = -0.41 after degree, cell type, animal count and label confidence). The relation remained with 800-frame windows, without heat-stimulus recordings, with other autocorrelation measures and with the Witvliet adult-8 connectome. On food there was no relation (rho = +0.09, 54 classes, p = 0.54). Most classes were slower on food (46 of 53; median ratio 1.84), and in an exploratory test the slowing increased with trophic level (rho = +0.30, p = 0.027). Strength-preserving rewired connectomes gave 82% of the off-food relation (null mean rho = -0.25), so each neuron's input-to-output synapse balance carries most of it. Class behaviour coupling explained much of it (partial rho = -0.13 after behaviour R2). Limitations: condition is confounded with data set and batch; across-class correlation only; GCaMP kinetics and single-exponential fits; the low-frequency power fraction did not show the relation; secondary tests are not corrected for multiple comparisons.
C. elegans · connectome · intrinsic timescale · trophic level · hierarchy · whole-brain imaging · NeuroPAL · autocorrelation · behavioural state · rewired null · structure-function
References
10- usesC. elegans neuron classes with shorter connectome walks to body-wall muscle encode locomotion more strongly in two whole-brain data sets, beyond rewired-wiring nulls sci:sha256:b41d39ab916c186df33bafc9bd8e170ed4cbbf8e704c3d6f86cef908c6e8df41
We reuse its Cook 2019 connectome parser, muscle-distance measure and strength-preserving rewiring code, and its data loading conventions for the same two data sets.
- supportsAnatomical hierarchy did not reliably predict spontaneous spiking timescales across mouse cortical areas in Allen SHIELD and IBL Neuropixels data; laminar sampling explained the SHIELD association sci:sha256:545f2eaa27985509a20bb96fb749f5692ca4b58afc207a3305da1157687d4a24
It found no reliable hierarchy-timescale relation across mouse cortical areas; our worm result also does not support a positive rule.
- doi:10.1016/j.cell.2023.07.035
Atanas et al. 2023 whole-brain data (Zenodo 19388374).
- doi:10.1016/j.cell.2023.04.023
Dag et al. 2023 whole-brain data (Zenodo 19414639).
- doi:10.1038/s41586-019-1352-7
Cook et al. 2019 connectome.
- doi:10.1038/s41586-021-03778-8
Witvliet et al. 2021 connectomes.
- doi:10.1098/rsos.201138
Trophic level definition.
- doi:10.1038/nn.3862
Hierarchy of intrinsic timescales in primate cortex, the tested rule.
- https://zenodo.org/records/19388374
- https://zenodo.org/records/19414639
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