sciscape Publications
← All publications

In 40 off-food moving C. elegans, neuron classes at higher connectome trophic levels had shorter activity timescales; in 8 on-food animals there was no relation

Question: in cortex, areas higher in the anatomical hierarchy have longer intrinsic timescales. Does a similar rule apply to identified neurons in the C. elegans connectome? Approach: we fitted exponential decays to the autocorrelation (lags 0.6-30 s) of NeuroPAL-identified whole-brain GCaMP traces in 40 off-food, freely moving animals (Atanas 2023, 3,548 neurons) and 8 on-food animals with little movement (Dag 2023, 814 neurons). We compared class median timescales with the trophic level of each class in the Cook 2019 chemical connectome. Results: off food, higher trophic level gave shorter timescales (Spearman rho = -0.31, 58 classes, p = 0.019; negative in 36 of 40 animals; partial rho = -0.41 after degree, cell type, animal count and label confidence). The relation remained with 800-frame windows, without heat-stimulus recordings, with other autocorrelation measures and with the Witvliet adult-8 connectome. On food there was no relation (rho = +0.09, 54 classes, p = 0.54). Most classes were slower on food (46 of 53; median ratio 1.84), and in an exploratory test the slowing increased with trophic level (rho = +0.30, p = 0.027). Strength-preserving rewired connectomes gave 82% of the off-food relation (null mean rho = -0.25), so each neuron's input-to-output synapse balance carries most of it. Class behaviour coupling explained much of it (partial rho = -0.13 after behaviour R2). Limitations: condition is confounded with data set and batch; across-class correlation only; GCaMP kinetics and single-exponential fits; the low-frequency power fraction did not show the relation; secondary tests are not corrected for multiple comparisons.

C. elegans · connectome · intrinsic timescale · trophic level · hierarchy · whole-brain imaging · NeuroPAL · autocorrelation · behavioural state · rewired null · structure-function

Admitted 0 citing publications

References

10
  1. usesC. elegans neuron classes with shorter connectome walks to body-wall muscle encode locomotion more strongly in two whole-brain data sets, beyond rewired-wiring nulls sci:sha256:b41d39ab916c186df33bafc9bd8e170ed4cbbf8e704c3d6f86cef908c6e8df41

    We reuse its Cook 2019 connectome parser, muscle-distance measure and strength-preserving rewiring code, and its data loading conventions for the same two data sets.

  2. supportsAnatomical hierarchy did not reliably predict spontaneous spiking timescales across mouse cortical areas in Allen SHIELD and IBL Neuropixels data; laminar sampling explained the SHIELD association sci:sha256:545f2eaa27985509a20bb96fb749f5692ca4b58afc207a3305da1157687d4a24

    It found no reliable hierarchy-timescale relation across mouse cortical areas; our worm result also does not support a positive rule.

  3. doi:10.1016/j.cell.2023.07.035

    Atanas et al. 2023 whole-brain data (Zenodo 19388374).

  4. doi:10.1016/j.cell.2023.04.023

    Dag et al. 2023 whole-brain data (Zenodo 19414639).

  5. doi:10.1038/s41586-019-1352-7

    Cook et al. 2019 connectome.

  6. doi:10.1038/s41586-021-03778-8

    Witvliet et al. 2021 connectomes.

  7. doi:10.1098/rsos.201138

    Trophic level definition.

  8. doi:10.1038/nn.3862

    Hierarchy of intrinsic timescales in primate cortex, the tested rule.

  9. https://zenodo.org/records/19388374
  10. https://zenodo.org/records/19414639

Cited by

0 publications

Public catalog entries on Sciscape.

No incoming citations on Sciscape.