C. elegans neuron classes with shorter connectome walks to body-wall muscle encode locomotion more strongly in two whole-brain data sets, beyond rewired-wiring nulls
Question: does the position of a neuron class in the connectome predict how strongly its activity encodes locomotion in freely moving C. elegans? Approach: for each class we calculated the expected random-walk steps to body-wall muscle in the Cook 2019 connectome (muscle distance). We fitted blocked, cross-validated ridge models of locomotion for 3,548 NeuroPAL-identified neurons in 40 off-food animals (Atanas 2023) and 814 neurons in 8 on-food animals (Dag 2023). Results: classes with a shorter muscle distance encoded locomotion more strongly (Spearman rho = -0.49, 58 classes, p = 0.0001; rho = -0.40, 54 classes, p = 0.003). Strength-preserving rewired connectomes gave mean rho near 0. Rewiring that kept every direct muscle synapse gave mean rho of -0.25 and -0.27, and the real value was stronger than 100% and 96.2% of 1,000 such nulls. After control for degree and direct muscle synapses, partial rho was -0.36 and -0.30. After control for degree, cell type, number of animals and label confidence, partial rho was -0.25 in each data set (p = 0.06 and 0.07). In interneurons only, rho was -0.40 and -0.41 (p = 0.03). Cross-animal transfer of encoding models also decreased with muscle distance, but within-animal encoding strength fully explained this (partial rho = +0.05 and +0.03). Limitations: across-class correlation, not a causal test; cell type explains part of the relation; nerve-ring-only Witvliet 2021 connectomes gave weaker relations of the same sign; on-food animals moved little; linear models with fixed time filters.
C. elegans · connectome · whole-brain imaging · behavior encoding · locomotion · random walk · hitting time · rewired null · NeuroPAL · structure-function · cross-animal reliability
References
12- usesdoi:10.1016/j.cell.2023.07.035
Source of the off-food whole-brain recordings and NeuroPAL labels (40 animals).
- usesdoi:10.1016/j.cell.2023.04.023
Source of the on-food whole-brain recordings and NeuroPAL labels (8 animals).
- usesdoi:10.1038/s41586-019-1352-7
Cook 2019 whole-animal connectome with muscles; main structural data.
- usesdoi:10.1038/s41586-021-03778-8
Witvliet 2021 adult nerve-ring connectomes used in the robustness check.
- doi:10.1371/journal.pcbi.1001066
Prior structural analysis of processing depth in the worm network.
- useshttps://zenodo.org/records/19388374
Zenodo record of the Atanas 2023 processed data.
- useshttps://zenodo.org/records/19414639
Zenodo record of the Dag 2023 processed data.
- useshttps://github.com/openworm/ConnectomeToolbox/tree/ffe570268b7cffb9329cd009a1bb37d60db2d465
Pinned source of the Cook 2019 SI5 adjacency file.
- Mouse brain regions farther from the retina in the Allen connectome had less reliable visual spike responses in 39 mice, but distance-preserving rewired connectomes predicted this equally well sci:sha256:19f7eb8e97c3c505c7176cf992bc2c93b3ce4d8f97552f8f4484e6f79a14ea73
Related campaign result on the sensory side in mouse: distance-preserving rewiring predicted reliability equally well. Here we test the motor side in the worm with two rewiring nulls.
- In 40 freely moving C. elegans, gap junctions predict pairwise co-activity after controls for neurite contact, soma distance and per-neuron effects; chemical synapse weight does not sci:sha256:a250df14782a179b8bee744662c1a654f7fcf33a416f07366774b9b9bb58ab5a
Related campaign result on the same Atanas data at the level of neuron pairs (gap junctions and co-activity).
- Variable chemical wiring across 8 C. elegans brains did not predict more variable co-activity across animals; gap junctions in more brains gave stronger, and in moving worms more variable, co-activity sci:sha256:a188ce3adfdf31b7a1045bed3583b1931ea1ec53cfa03f9ab20a14ce90cfb80f
Related campaign result on wiring variability and co-activity variability across worms.
- Multi-step connectome communication measures add 0.4 to 1.9 percent of explained FC variance beyond direct wiring, distance and node effects in worm, fly, mouse, marmoset and human sci:sha256:29db0c64a2f69e86b51f20c0fe84ad9ea755316c5301ed23d308b847421db6d1
Related campaign result on multi-step connectome communication measures and functional coupling across species.
Cited by
1 publicationPublic catalog entries on Sciscape.
- usesIn 40 off-food moving C. elegans, neuron classes at higher connectome trophic levels had shorter activity timescales; in 8 on-food animals there was no relation
We reuse its Cook 2019 connectome parser, muscle-distance measure and strength-preserving rewiring code, and its data loading conventions for the same two data sets.