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C. elegans neuron classes with shorter connectome walks to body-wall muscle encode locomotion more strongly in two whole-brain data sets, beyond rewired-wiring nulls

Question: does the position of a neuron class in the connectome predict how strongly its activity encodes locomotion in freely moving C. elegans? Approach: for each class we calculated the expected random-walk steps to body-wall muscle in the Cook 2019 connectome (muscle distance). We fitted blocked, cross-validated ridge models of locomotion for 3,548 NeuroPAL-identified neurons in 40 off-food animals (Atanas 2023) and 814 neurons in 8 on-food animals (Dag 2023). Results: classes with a shorter muscle distance encoded locomotion more strongly (Spearman rho = -0.49, 58 classes, p = 0.0001; rho = -0.40, 54 classes, p = 0.003). Strength-preserving rewired connectomes gave mean rho near 0. Rewiring that kept every direct muscle synapse gave mean rho of -0.25 and -0.27, and the real value was stronger than 100% and 96.2% of 1,000 such nulls. After control for degree and direct muscle synapses, partial rho was -0.36 and -0.30. After control for degree, cell type, number of animals and label confidence, partial rho was -0.25 in each data set (p = 0.06 and 0.07). In interneurons only, rho was -0.40 and -0.41 (p = 0.03). Cross-animal transfer of encoding models also decreased with muscle distance, but within-animal encoding strength fully explained this (partial rho = +0.05 and +0.03). Limitations: across-class correlation, not a causal test; cell type explains part of the relation; nerve-ring-only Witvliet 2021 connectomes gave weaker relations of the same sign; on-food animals moved little; linear models with fixed time filters.

C. elegans · connectome · whole-brain imaging · behavior encoding · locomotion · random walk · hitting time · rewired null · NeuroPAL · structure-function · cross-animal reliability

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References

12
  1. usesdoi:10.1016/j.cell.2023.07.035

    Source of the off-food whole-brain recordings and NeuroPAL labels (40 animals).

  2. usesdoi:10.1016/j.cell.2023.04.023

    Source of the on-food whole-brain recordings and NeuroPAL labels (8 animals).

  3. usesdoi:10.1038/s41586-019-1352-7

    Cook 2019 whole-animal connectome with muscles; main structural data.

  4. usesdoi:10.1038/s41586-021-03778-8

    Witvliet 2021 adult nerve-ring connectomes used in the robustness check.

  5. doi:10.1371/journal.pcbi.1001066

    Prior structural analysis of processing depth in the worm network.

  6. useshttps://zenodo.org/records/19388374

    Zenodo record of the Atanas 2023 processed data.

  7. useshttps://zenodo.org/records/19414639

    Zenodo record of the Dag 2023 processed data.

  8. useshttps://github.com/openworm/ConnectomeToolbox/tree/ffe570268b7cffb9329cd009a1bb37d60db2d465

    Pinned source of the Cook 2019 SI5 adjacency file.

  9. Mouse brain regions farther from the retina in the Allen connectome had less reliable visual spike responses in 39 mice, but distance-preserving rewired connectomes predicted this equally well sci:sha256:19f7eb8e97c3c505c7176cf992bc2c93b3ce4d8f97552f8f4484e6f79a14ea73

    Related campaign result on the sensory side in mouse: distance-preserving rewiring predicted reliability equally well. Here we test the motor side in the worm with two rewiring nulls.

  10. In 40 freely moving C. elegans, gap junctions predict pairwise co-activity after controls for neurite contact, soma distance and per-neuron effects; chemical synapse weight does not sci:sha256:a250df14782a179b8bee744662c1a654f7fcf33a416f07366774b9b9bb58ab5a

    Related campaign result on the same Atanas data at the level of neuron pairs (gap junctions and co-activity).

  11. Variable chemical wiring across 8 C. elegans brains did not predict more variable co-activity across animals; gap junctions in more brains gave stronger, and in moving worms more variable, co-activity sci:sha256:a188ce3adfdf31b7a1045bed3583b1931ea1ec53cfa03f9ab20a14ce90cfb80f

    Related campaign result on wiring variability and co-activity variability across worms.

  12. Multi-step connectome communication measures add 0.4 to 1.9 percent of explained FC variance beyond direct wiring, distance and node effects in worm, fly, mouse, marmoset and human sci:sha256:29db0c64a2f69e86b51f20c0fe84ad9ea755316c5301ed23d308b847421db6d1

    Related campaign result on multi-step connectome communication measures and functional coupling across species.

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