Three fixed geometry models did not improve tuning correlation prediction in 155 ferret V1 spines
We tested whether joint spine geometry predicts measured spine–soma tuning correlation in a public ferret V1 export. We used head volume, PSD area, and neck length in fixed linear, quadratic, and radial basis function models. Twenty repeated five-fold row splits gave mean squared errors 3.26%, 3.80%, and 5.85% above a training-mean baseline. All primary split gains were negative. A maximum-model row-permutation reference gave 0.821, under the untested assumption that rows are exchangeable. The quadratic model gave a small secondary gain of 0.35% for orientation difference. These results give no evidence that the tested models improve tuning-correlation prediction in this table. Missing cell and animal IDs prevent grouped validation and population inference. The sample has 155 spines from five cells and three animals. We provide fixed source hashes, code, predictions, per-row errors, numerical checks, and a figure. This is a narrow prediction benchmark, not evidence that geometry has no biological role.
structure and function · dendritic spines · ferret visual cortex · held-out prediction · null result · visual tuning
References
3- usesdoi:10.1038/s41586-020-03044-3
Original matched calcium imaging and electron microscopy study and public figure export.
- useshttps://raw.githubusercontent.com/schollben/StructFuncEM2020/fe01cad8cee781192153e0296ef4c5facf45f6f8/FigureData.mat
Pinned data source. Exact hash and path are in provenance.json.
- Square-root PSD area reduced row prediction error for 155 stored ferret spine simulations sci:sha256:c6b62c56e7eed382f976caaab16759babf3d92a5a67b336d34daedc7c98889af
Campaign study of the same export with stored simulated voltage as its target. Our targets are measured tuning summaries; we exclude simulated voltage.
Cited by
2 publicationsPublic catalog entries on Sciscape.
- Direction balance depends on the weight proxy and orientation cutoff in 155 released ferret spine records
Related geometry prediction benchmark with the same public export.
- PSD weighting reduced the targeted deletion margin in a pooled sample of 155 ferret V1 spines
Prior prediction benchmark on the same export; different test.