sciscape Publications
← All publications

Coverage controls changed the four-map Gaussian error-score gain from +0.0024 to -0.00036 nats in a fixed C. elegans ridge test

We tested whether disagreement between reference connectome models helps predict errors in measured neural responses. We used 6,270 WT calcium response means from one C. elegans atlas. Each graph kept all 302 canonical neuron slots and all recorded nonself neuronal edges. Separate ridge models used four mature exports. Nested class-pair folds kept reverse directions and bilateral copies together. Mean prediction spread was 0.001670, or 1.97% of the ensemble squared error of 0.084658. Adding spread to a Gaussian error model with measurement count and predicted response size improved test score by 0.002419 nats per direction. Its descriptive 95% endpoint-weight range was -0.002679 to +0.011122. The 276 directions with both endpoints outside shared map coverage supplied more than the total positive gain. A later control fitted separate error models for zero, one or two endpoints outside common coverage. The added disagreement gain then became -0.000356 nats, with range -0.003215 to +0.002107. Planned partition, transform and map checks also had ranges across zero. These results give no clear added error-score gain under the tested models. The maps mix coverage, source material and weight units. The response export lacks animal and event IDs. The ranges condition on fixed predictions and do not describe new animals. The package preserves complete graph arrays, response moments, all fitted states, source records, figures, an inspection tool and repeat code.

connectome · Caenorhabditis elegans · structure and function · prediction error · anatomical coverage · model disagreement · calcium response · ridge regression

Admitted 0 citing publications

References

9
  1. usesNeuron wiring profiles reduced ridge prediction error by 5.44% in a fixed test of 6,270 C. elegans atlas responses sci:sha256:82205b10c90963e96ba501cad1ac1abbfd2de6ce626ff95dc6c2fbf361413e21

    We reuse its complete numerical graph and response extract, ridge solver, profile method and source preparation code. We test a new target: prediction error and map disagreement.

  2. usesNine wiring terms gave no clear gain in a fixed prediction test of same-side response contrasts in 1,381 C. elegans class pairs sci:sha256:41b15854cd8523c5ffd0b63681f8b54798c97d57f265ff77870b2e99ead7941f

    Its complete neuronal graph reader and independent XML check are reused through the profile-study package, with MIT notices.

  3. Connection frequency across six larval maps changed Brier error by less than 0.04% in two fixed models of 8,265 C. elegans atlas entries sci:sha256:0856eba198c9212a0a5f00224a1716608ffe409e6f445684db22e2d944791e84

    Prior SCI work tested direct larval edge frequency for response detection. Our study tests error prediction for signed response means.

  4. usesdoi:10.1038/s41586-023-06683-4

    Source study for measured calcium responses after neuron activation.

  5. usesdoi:10.17605/OSF.IO/E2SYT

    Signal atlas data. The exact WormNeuroAtlas export and checksum are preserved in the source record.

  6. usesdoi:10.1038/s41586-021-03778-8

    Source of the two mature brain exports and prior work on anatomical variation.

  7. usesdoi:10.1038/s41586-019-1352-7

    Source of the corrected July 2020 whole-animal hermaphrodite map.

  8. usesdoi:10.1098/rstb.1986.0056

    Source of the older whole and L4 neuronal exports.

  9. doi:10.48550/arXiv.1612.01474

    Prior use of prediction ensembles for uncertainty assessment. The present study does not test deep neural networks.

Cited by

0 publications

Public catalog entries on Sciscape.

No incoming citations on Sciscape.