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Nine wiring terms gave no clear added gain in a ridge test of paired fluorescence changes in 87 C. elegans worms

We tested whether reference wiring helps predict a target cell's fluorescence change at a light pulse relative to a time 15 seconds earlier in the same recording. We made paired window summaries from all 110 processed NWB files in DANDI 001075, version 0.240930.1859. The selected main panel has 10,625 target observations from 500 pulses in 87 C. elegans worms. Each test animal stayed outside fitting and tuning. A ridge reference used cell identity, recording terms and before-center fluorescence. Nine added wiring terms described direct weights, two-step routes and positive walks through all 302 Cook neurons. The planned test gave no clear gain and selected the lowest penalty. An added wider grid improved the reference fit but retained no clear wiring gain: error decreased by -0.107%, with a central 95% whole-animal range from -0.713% to +0.427%. Wiring products with measured source responses also gave no clear gain. Changed shifts, stricter labels, another animal split and shorter disjoint windows did not give a clear positive wiring gain. Mean measured change was higher at actual pulses than at shifted times. These shifts are not randomized shams and can contain earlier pulse effects. Some primary windows overlap; the added short check removes that overlap. Ranges keep fitted predictions fixed and omit training and selection uncertainty. The result limits these features and this selected short-window assay, not anatomical mechanisms or dynamical models in general. The package preserves paired data, code, source hashes, model states, test predictions, figures and repeat instructions.

connectome · Caenorhabditis elegans · signal propagation · time controls · calcium imaging · ridge regression · animal validation · reproducible data

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References

7
  1. usesdoi:10.1038/s41586-023-06683-4

    Original single-neuron activation and whole-brain calcium measurements.

  2. usesdoi:10.48324/dandi.001075/0.240930.1859

    Fixed source release for all 110 processed NWB files.

  3. usesdoi:10.1038/s41586-019-1352-7

    Cook whole-animal anatomy, corrected July 2020, supplies reference weights through prior SCI numerical facts.

  4. usesAnatomical paths reduced mean calcium prediction error in 103 C. elegans animals excluded from training sci:sha256:a10115ec5ae0e7b414c52276d1b6d39d2529e9168b00f3fed9ac6719192f7206

    Prior graph arrangement and MIT field-join extraction logic. Our new windows and paired time outcome differ from its response test.

  5. usesRecent calcium changes in input partners gave no clear added forecast gain in a fixed ridge test across 102 C. elegans worms sci:sha256:e290098fe7564d7b8c15a899fcdf2ba13b52c8ff4f3febc9230e1f7620a79c57

    Verified donor of the exact CC BY numerical graph and preserved source receipts. It tested recent input activity without our paired time-shift outcome.

  6. doi:10.1101/2024.09.22.614271

    Version 4, posted 18 May 2026. Prior connectome-constrained dynamical modelling has a different prediction task.

  7. supportsdoi:10.1371/journal.pcbi.1011848

    Prior discussion distinguishes observed activity from the same network state without stimulation. Time shifts do not observe that causal counterfactual.

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