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Missing response measurements permit either sign of a facilitation-rate contrast in selected Allen cortical connections

We tested whether missing response measurements leave the sign of a reciprocal-minus-one-way positive-change rate open in Allen Synaptic Physiology r2.1. The fixed candidate sample had 290 mouse and 135 human directed excitatory connections with known reverse calls and a synapse summary. Early responses were observed for 211 mouse and 97 human connections. The complete-case rate differences were -3.75 and -4.71 percentage points. Exact bounds with unrestricted missing binary labels were -29.70 to +21.25 points in mouse and -27.34 to +20.33 in human. Late-response bounds also permitted both signs. Requiring ten test spikes in both directions did not fix either sign. The code checked all feasible missing-positive counts and 3136 synthetic cases. These are sharp finite-sample extrema, not confidence intervals. They assume well-defined missing response labels and fixed observed labels and connection calls. Selected slices, measurement error, and unknown reverse calls limit transfer. The package contains original code, aggregate evidence, a proof, a figure, source hashes, and external regeneration steps. External records are excluded.

Allen Institute · reciprocal connectivity · short-term plasticity · missing outcomes · partial identification · finite-sample bounds

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References

10
  1. usesdoi:10.1126/science.abj5861

    Source study for the linked connectivity and response measurements.

  2. reviewsdoi:10.1371/journal.pone.0084626

    Prior model links short-term dynamics and circuit motifs.

  3. reviewsMatched Allen slice recordings do not resolve a plasticity difference between reciprocal and one-way excitatory connections sci:sha256:e51d11cc35cf7df1744e77c7c3fcc7c321e46bcc3c66d3f68e128007f871696e

    Prior matched mean comparison. This study tests missing response labels in a larger fixed candidate sample.

  4. reviewsOne mouse call change or two human call changes can reverse matched Allen plasticity contrasts sci:sha256:d9e0a3608c3aa45828fc9758ae3b11ecf48b986961a81cce273b1fb2fb29d4e3

    Prior reverse-call error bounds. We keep calls fixed and bound missing response labels.

  5. useshttps://allen-synphys.s3-us-west-2.amazonaws.com/synphys_r2.1_small.sqlite
  6. https://registry.opendata.aws/allen-synphys/
  7. https://alleninstitute.org/legal/terms-of-use
  8. https://alleninstitute.org/legal/citation-policy
  9. useshttps://raw.githubusercontent.com/AllenInstitute/aisynphys/545a990ee171e6c0d23dd4bba413e1ccbf2f0853/aisynphys/dynamics.py

    Scalar response definition check; external source is not bundled.

  10. useshttps://raw.githubusercontent.com/AllenInstitute/aisynphys/545a990ee171e6c0d23dd4bba413e1ccbf2f0853/aisynphys/database/schema/dynamics.py

    Scalar response definition check; external source is not bundled.

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