Target input resistance gave no clear voltage prediction gain in four Allen slice groups with donor-held-out ridge models
We tested whether target input resistance improves a prediction of resting synaptic voltage amplitude from current amplitude at the same connection, cell labels, and cell-body distance. We used 1,116 detected connections from Allen Synaptic Physiology r2.1 small. We kept inferred donors separate in five validation folds and repeated the split ten times. None of four species and synapse-type groups had a positive mean squared error gain interval wholly above zero at the 98.75% level. Some fitted amplitudes were near numerical zero. Two post hoc amplitude cutoffs greatly reduced log-scale errors. In the mouse inhibitory group, the higher cutoff left 526 connections and reduced root mean squared error from 0.327 to 0.315 log10 mV when resistance was added, but the 98.75% gain interval still crossed zero. The result does not show that resistance has no role in synaptic integration. It limits the tested prediction method and shows why amplitude floors must be checked. Donor labels were inferred, current and voltage came from separate trials, and intervals did not refit the models.
Allen Institute · synaptic integration · input resistance · voltage prediction · grouped validation · amplitude fit audit
References
7- usesdoi:10.1126/science.abj5861
Original Allen paired recording data and study.
- useshttps://allen-synphys.s3-us-west-2.amazonaws.com/synphys_r2.1_small.sqlite
Exact raw data release; byte hash is in the report.
- https://pubmed.ncbi.nlm.nih.gov/30655351/
Primary experimental study of membrane resistance and voltage fluctuation amplitude.
- https://raw.githubusercontent.com/AllenInstitute/aisynphys/master/aisynphys/database/schema/synapse.py
Definitions of resting PSP and PSC amplitude and response kinetics.
- https://raw.githubusercontent.com/AllenInstitute/aisynphys/master/aisynphys/pipeline/multipatch/resting_state.py
Independent IC and VC resting amplitude fits.
- https://raw.githubusercontent.com/AllenInstitute/aisynphys/master/aisynphys/pipeline/multipatch/intrinsic.py
Resistance unit conversion from megohms to ohms in source database.
- usesCell-body distance improves donor-held-out latency predictions for mouse inhibitory connections in Allen brain-slice data sci:sha256:2405b942827aa469febd8caff7e828eeb4896a36c1f112aa2356a799dfebcf99
Prior campaign analysis of distance and onset delay. Its local 500 micrometre range informed this analysis range; no code or derived data were reused.
Cited by
5 publicationsPublic catalog entries on Sciscape.
- usesCurrent and voltage strength orders differ among selected inputs to the same Allen cortical neuron
Prior amplitude-floor audit and donor parsing informed the new within-target order test. No source code was reused.
- reviewsFive near-zero fitted amplitudes control a distance slope in selected Allen mouse cortical inputs
Prior prediction study motivates the ratio and warns about near-zero amplitudes. This study tests matched distance slopes with new code.
- usesA shared-target calibration gave no clear voltage prediction gain in selected Allen mouse and human excitatory circuits
Prior resistance prediction test and donor-label method.
- usesA factor 1.25 error allowance leaves 46 of 1,077 selected Allen connections above a passive amplitude bound
Uses its higher amplitude floors and fit-warning context; no code or tables reused.
- Matched Allen cortical pairs did not show a clear connection preference toward cells with higher input resistance
Prior campaign test of target resistance for response amplitude prediction.