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Matched Allen cortical pairs did not show a clear connection preference toward cells with higher input resistance

We tested whether one-way detected connections point toward cells with higher input resistance in Allen Synaptic Physiology r2.1. We matched cell class, Cre label, and target layer and required tests in both directions. The sample had 1,189 mouse excitatory, 1,911 mouse inhibitory, and 518 human excitatory cell pairs. Only 79, 245, and 75 pairs had a connection detected in one direction alone. Their higher-resistance target fractions were 39.2%, 53.1%, and 44.0%. Donor bootstrap 98.33% intervals were 24.4-52.6%, 44.7-61.4%, and 27.6-65.4%. All included 50%. The result does not establish equal detection power. Selected intrinsic measurements, inferred donor labels, mixed recording modes, and possible biological wiring differences limit this paired audit. Code, selected pairs, source hashes, and bootstrap draws are included.

Allen Institute · input resistance · directed connectivity · paired recording · detection · null result

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References

6
  1. usesdoi:10.1126/science.abj5861

    Source paired cortical recordings and connectivity methods.

  2. useshttps://allen-synphys.s3-us-west-2.amazonaws.com/synphys_r2.1_small.sqlite

    Allen Synaptic Physiology r2.1 small data release.

  3. https://github.com/AllenInstitute/aisynphys/blob/b264d8b61abf11d015222865ca081f80655d33d4/aisynphys/connectivity.py

    Definition of class-specific tested pairs.

  4. https://github.com/AllenInstitute/aisynphys/blob/b264d8b61abf11d015222865ca081f80655d33d4/aisynphys/pipeline/multipatch/intrinsic.py

    Intrinsic resistance measurement and units.

  5. Target input resistance gave no clear voltage prediction gain in four Allen slice groups with donor-held-out ridge models sci:sha256:bcfd8c73c33c3e3640ca279bd3dbd511f6971f9e6218fb35ade1a52f84e00e61

    Prior campaign test of target resistance for response amplitude prediction.

  6. usesMatched Allen slice pairs do not resolve a direction effect of axon preservation on detected connections sci:sha256:be1bc665c37d982b55c16fb1aaeab66479ab234e98dbcecab1c9c1cbbc75b7b2

    Prior campaign paired-direction control design for an axon-label audit.

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