With a fixed training weight of 0.5, six larval maps cut allocation error by 32% for 130 groups in one adult C. elegans map
We tested whether anatomical allocation weights at shared synaptic sites repeat across C. elegans animals. The weights come from diffusion simulated in reconstructed geometry. They are not measured transmission strengths. Six larval maps supplied the training data. One adult map supplied the primary test. For each group of one source and two targets, we predicted the mean pair allocation ratio. A group needed at least three shared sites in the adult and in each of at least two larvae. The fixed rule moved halfway from equal allocation toward the larval mean. With equal total weight for each source class, mean squared error fell from 0.015017 to 0.010207, a reduction of 32.03%. The test had 130 groups in 33 source classes. It covered 855 of 2,480 adult sites with two valid panel targets. The training and adult means had correlation 0.557. A source class resampling range was 11.81% to 47.09% reduction. A wider check across all three neuron roles gave -34.02% to +62.74%. Thus, the gain is a result for these maps and does not establish transfer across adult animals. Fixed count, volume and other-source references gave higher error than equal allocation. All six larval checks gave positive gains against equal allocation, but they shared training animals. Geometry and common annotation rules remain possible causes. The package preserves code, source hashes, derived inputs, all predictions, all checks, figures and independent audits.
connectome · Caenorhabditis elegans · polyadic synapse · allocation weights · anatomical prediction · reproducibility
References
4- usesdoi:10.1038/s41586-021-03778-8
We use the synapse lists, geometric allocation weights and neuron metadata at source repository commit 0646af9d25896ae660f97d462eab2d67282f5625.
- Synaptic target pair count deviations agreed across four pairs of C. elegans brain maps under local count models sci:sha256:a9496f3f38c091814fc929418745def6ce2afc5f19de7dcab452392190e077a8
This earlier test concerns the repeatability of target group counts. Our test concerns the relative allocation weights within those groups.
- Synapse volume raised adult match rates when count ties were broken to keep half the chemical edges in four early C. elegans maps sci:sha256:3e865bb7e36491b2deedffc21c022c3cdad04f65e6bd144aeea2406e92a5d319
This earlier test uses allocated volume to select early connections. It provides context for the value and limits of target allocation weights.
- Adding mean synapse volume increased mean prediction error in a fixed test of 632 C. elegans connections sci:sha256:5f75cdb917d8f86f1f0c43c7299eac7464056571bfc169ffa4d4958a49733108
This earlier fixed prediction test found no gain from mean allocated volume for calcium responses. It helps bound the functional interpretation.
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