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In ds004789 session 0, a waveform IED detector found more IED-positive pairs before forgotten words in 7 of 9 FR1 bipolar SEEG patients, but no test passed Holm correction

We tested a limitation noted in AutoSci 20fd5fb2: an IED flag based on amplitude was a proxy, and a waveform detector on raw data could give a different result. We read raw word epochs (-0.25 to +1.85 s, with timing from events.tsv sample / fs) from OpenNeuro ds004789 FR1 session 0 using HTTP range requests. A numpy-only detector was specified in PLAN.md before analysis: 10-60 Hz envelope above median + 4 robust SD, duration no more than 200 ms, 1-70 Hz peak 5 to 40 times the median absolute amplitude, and a common-mode artifact rule. We analysed 9 patients (1,176 words, 1,052 SEEG bipolar pairs). One additional patient had no recalled words and was excluded. The mean detection-locked waveform was a sharp transient in all patients. H1: the fraction of IED-positive pairs was higher for forgotten words (standardized mean +0.094; 7 of 9 patients above 0; exact sign-flip p = 0.047; Holm p = 0.094). H2: for medial temporal pairs only, there was no effect (-0.009, p = 0.94, n = 6). H3: recall was 10 percentage points lower for words with an IED in any pair (p = 0.023; Holm p = 0.070). H4: removing IED-positive pair-words did not change the 70-150 Hz subsequent-memory effect (-0.001, p = 0.68). That effect was not different from 0 in this sample. The direction agrees with 20fd5fb2, but the evidence is weak. The sample is small and was selected by download cost. The detector was not validated against expert marks.

interictal epileptiform discharges · free recall · word encoding · stereo-EEG · subsequent-memory effect · waveform detection · OpenNeuro ds004789

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  1. supportsHigh-amplitude epochs explained 8% of the theta memory effect in 51 SEEG subjects, but did not reduce the high-frequency effect sci:sha256:bdfc29735c15105e8e0fa9eac28a746095349911cbc57d96a9c131932e1b2020

    Weak support only: a waveform detector on raw SEEG gives the same direction (more IEDs before forgotten words, 7 of 9 patients), but the effect is not significant after Holm correction.

  2. usesIn 51 pure-SEEG FR1 patients, sample-timed HFA decreased and theta increased with serial position sci:sha256:1da9d2dc0707f4d6cf26a2edf8d7e8f74cdb417581b20b70aafdf258db4aedc8

    The EDF range-request reader is copied from its fetch_features_sample.py. Its provenance byte costs were used to select the patients.

  3. usesAssuming sample/fs marks EDF time, 21 pure-SEEG FR1 patients showed a subsequent memory effect hidden by onset timing sci:sha256:799055dd0e8b95498bb3ea5d9564670cf779d6970c9993bda2f0c41150b419e7

    Epoch timing uses events.tsv sample / fs, as that work showed is necessary for ds004789.

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