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Conditional-mean imputation matched refitting after simulated SEEG channel loss but recovered only 14% of key-shaft AUC loss

This replication tested three preregistered hypotheses about conditional-mean imputation (CMI) after simulated loss of stereo-electroencephalography (SEEG) channels, using 70–150 Hz bipolar power features from 15 patients in OpenNeuro ds006253 performing mouse movement versus rest. A shrinkage linear discriminant decoder used a time-ordered 60/40 train/test split. All three exact one-sided sign-flip tests passed after Holm correction: after loss of the key shaft, CMI exceeded mean fill by 0.0080 AUC (95% bootstrap CI 0.0025 to 0.0157; 13/15 patients; p=0.0018); CMI was non-inferior to a labeled refit within a 0.01 AUC margin (-0.0011; CI -0.0023 to -0.0001; 15/15; p=0.00009); and CMI was non-inferior after random loss of 25% of pairs (+0.00005; CI -0.0002 to +0.0003; 15/15; p=0.00009). Mean AUC with all pairs was 0.836. However, CMI recovered only 14% of key-shaft AUC loss: losses versus full-channel performance were -0.059 for mean fill, -0.051 for CMI, and -0.050 for refitting. Two patients had large key-shaft losses (sub-09: -0.232 with mean fill and -0.220 with CMI; sub-23: -0.200 and -0.192). The results support continuation without new labeled trials in this offline setting, but show that neither method recovered most of the information lost with the key shaft. Limits include simulated loss, one session per patient, same-session testing, one center, one band, one binary contrast, and a linear decoder.

conditional-mean imputation · stereo-electroencephalography · brain-computer interface · channel loss · linear discriminant analysis · intracranial EEG · replication

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References

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  1. In 8 SEEG subjects, label-free imputation matched a labeled refit after known channel loss, but key-shaft loss still reduced AUC sci:sha256:f80b1dde0264dcadff2e88a71c5f153ccd2ae80e010b03faaf9aae308f77cdfe

    [Legacy relation: reproduces] Same 3 pre-registered hypotheses (H1 KEY CMI > MEAN; H2 KEY CMI non-inferior to REFIT; H3 R25 CMI non-inferior to REFIT) and the same lda_fit code, on a second dataset (ds006253, 15 patients, mouse movement) with HG only. All 3 pass. The fraction of the key-shaft loss that CMI recovers is lower here (14% vs about 25%).

  2. usesSummed per-shaft SEEG scores were non-inferior to joint decoding, while four selected shafts were not shown non-inferior in 15 patients sci:sha256:204342dfc342cc97cfebafa988122bac90f00ae8fe0ba5b36628d12197213da0

    The 15 per-patient feature npz files (copied unchanged, same SHA-256), the loader, the 60/40 split and the sign-flip and bootstrap functions.

  3. usesA pre-registered test found movement decoding in five additional ds006253 patients, with mean held-out AUC 0.874 sci:sha256:5b7e7453bf9d35bc1113c364ab3daac7fd7cdc393cb61b160586cbaf516dc375

    Original extraction of the ds006253 70-150 Hz MOVE and REST window features with provenance JSON.

  4. supportsIn 8 offline SEEG subjects, dropout augmentation lowered AUC; conditional-mean imputation was within about 0.001 AUC of refits at 25% and 50% simulated channel loss sci:sha256:3a2412f50543607ab1a2d73aeba29dce9596abcd5a9d9de95cc4b2bdce60f9ac

    f4e83e19 found CMI within about 0.001 AUC of a labeled refit. Here CMI - REFIT is -0.0011 (key shaft), +0.00005 (25% loss) and -0.0002 (50% loss) on ds006253.

  5. doi:10.1101/2024.03.23.586414

    The source dataset metadata lists this study in ReferencesAndLinks; cited as background for the MetaRDK dataset. The exact ds006253 snapshot used for the archived features is not recorded, so no version-specific dataset DOI is asserted.

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