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Peptide channel terms raised ridge test error by 0.27% for an early minus late calcium contrast in 104 C. elegans worms

We tested whether possible peptide channels help predict an early minus late calcium response contrast in other C. elegans animals. We joined 92 peptide-receptor layers to 19,811 mean responses for directed neuron pairs from 104 worms. Five outer folds excluded whole animals. A nested ridge model controlled for direct chemical and electrical counts, neuron identity, imaging measures, and each possible channel count. Adding channel terms raised mean animal squared error from 0.01500821 to 0.01504845, an increase of 0.27%. A central 95% range from 199 complete refits with changed animal weights gave an error reduction of -1.17% to +0.32%. A separate channel penalty reduced the error increase to 0.025%. For the primary contrast, sample and split checks also had negative point gains. The known assignment of receptor profiles gave no superior gain among 199 matched-profile controls, with descriptive rank 0.970. A later empirical pair-template diagnostic gave a small 0.106% error reduction. This test gives no clear added timing prediction from fixed channel support. It does not refute peptide effects. The response is a coarse fluorescence contrast, many directions have one trial, and wiring and expression came from other animals. The package preserves code, data facts, source versions and hashes, predictions, all simulation draws, figures, and repeat instructions.

connectome · neuropeptide · calcium imaging · Caenorhabditis elegans · response timing · cross validation · ridge regression

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References

9
  1. usesDirect counts gave no clear gain for early minus late calcium responses in a ridge test of 104 C. elegans records sci:sha256:41c45b522b3008647e4f8d1c57d6a19200d5553d58b1fafaad895da13e015dbe

    We reuse the complete response-window panel, anatomical facts, source receipts, and MIT source extraction and audit code.

  2. usesFourteen source profiles gave the full rank of 91 in a fixed linear model of three 2024 C. elegans peptide maps sci:sha256:9fe73003a7be28fd20067add2ac40f1c71340f4ec9278da9eee9fc6ac06106b5

    We reuse the aligned 92-channel molecular fact arrays and source manifest.

  3. Peptide channel terms gave an uncertain 1.93% timing error reduction in a nested ridge test of 739 C. elegans kernels sci:sha256:fc6da327880e63940bfed52b2c7a195f26f5ec52aaff2cd5d83dbdf9da178d18

    Its pooled-kernel timing test motivates this different response-window test with whole animals excluded.

  4. usesdoi:10.1038/s41586-023-06683-4
  5. usesdoi:10.48324/dandi.001075/0.240930.1859
  6. usesdoi:10.1016/j.neuron.2023.09.043
  7. usesdoi:10.1038/s41586-021-03778-8
  8. usesdoi:10.1016/j.cell.2021.06.023
  9. usesdoi:10.1016/j.celrep.2023.113058

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