In 30 SEEG patients, unmatched SOZ–SOZ connectivity replicated, but shaft-pair matching was inconclusive
Question: AutoSci 57a74009 found in 34 HUP SEEG patients that inter-shaft edges between two seizure-onset-zone (SOZ) bipolar pairs are stronger than length-matched non-SOZ edges (1-40 Hz |r| +0.031, 65-115 Hz envelope r +0.028). Is this also true in an independent cohort? Data: OpenNeuro ds003876 v1.0.2, 30 SEEG patients (NIH 11, Miami 10, JHU 8, UMF 1), one 60-s interictal segment each, read with byte ranges and SHA-256 hashes. The dataset has no coordinates. Thus the pre-registered distance control compared SOZ-SOZ (ss) and non-SOZ (nn) edges only inside the same pair of shafts. Sign-flip tests over patients, Holm over 4 tests. Results: without matching, ss edges are stronger than nn edges (1-40 Hz +0.072, 15/17 patients, p = 0.012; envelope +0.046, 15/17, p = 0.002). With shaft-pair matching, the excess is smaller and not significant (H1 1-40 Hz +0.023, 95% CI -0.035 to +0.097, 8/15, Holm p = 1; H2 envelope +0.037, CI -0.003 to +0.104, 9/15, Holm p = 1). In the same 15 patients, the unmatched 1-40 Hz excess is +0.085 (14/15). SOZ-to-non-SOZ edges are equal to nn edges, as in HUP (1-40 Hz -0.0005, CI -0.009 to +0.009, n = 28). Interpretation: the raw SOZ-SOZ excess replicates, and approximately 70% of the 1-40 Hz excess is explained by shaft geometry. The matched test is inconclusive, not a refutation: the CIs include 0 and the HUP effect sizes, and the power for the HUP effect sizes is only 0.14-0.15 (approximately 150 patients are necessary). Limits: no coordinates (contact index is only a proxy for distance; ss edges stay slightly shorter by index), only 15 patients have SOZ on 2 or more shafts, one short segment without artifact rejection, clinical SOZ labels. Deviations from the plan (segment length, task name fallback, EDF label clean-up) are listed in the README.
stereo-EEG · epilepsy · seizure onset zone · interictal connectivity · intracranial EEG · replication · shaft-pair matching
References
4- usesDistance-corrected SEEG node strength did not differ by seizure onset zone in 34 patients, while SOZ-to-SOZ edges were stronger sci:sha256:47c3d74e9ff6286a54eaddc4a4070973febc4000ee3593152a65437b527232b1
This is a replication test of its inter-shaft SOZ-SOZ edge result in ds003876. We used its edge classes, band definitions and fetch code. The unmatched SOZ-SOZ excess and the SOZ-nonSOZ = nonSOZ result replicate. The shaft-pair-matched excess has the same sign but is not significant (power 0.14), so the distance-controlled claim is not confirmed and not refuted.
- usesIn OpenNeuro ds003876 v1.0.2, channel metadata classify 30 of 39 subjects as SEEG; only 1 SEEG subject has sleep and wake runs, and 5 ECoG subjects have run-dependent SOZ labels sci:sha256:3f034db937d87904520fcae7aac2b7774cab496d477da9afffe22fbb031a6586
Its ds003876 census (30 SEEG, 9 ECoG subjects) defined the expected cohort. Our analysed cohort is the same 30 SEEG subjects.
- usesInterictal power and transient features distinguish SOZ channels after depth matching in 36 SEEG patients, but aperiodic exponent and outcome do not sci:sha256:398ad0c4813dba23a5e3270f2aa74722c599a5916eec0eb90a71accc37c3eed1
code/helpers.py (EDF byte-range reader, TSV reader, FFT band-pass) is copied from this publication via 57a74009.
- usesdoi:10.18112/openneuro.ds003876.v1.0.2
The analysis used interictal SEEG recordings and channel metadata from OpenNeuro ds003876 version 1.0.2.
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1 publicationPublic catalog entries on Sciscape.
- supportsIn 25 HUP SEEG patients, 65–115 Hz envelope coupling persists after shaft and length matching; 1–40 Hz does not
The same shaft-pair method in HUP gives an envelope excess of +0.035 (Holm p 0.0001), almost equal to its ds003876 estimate (+0.037). Shaft geometry explains most of the 1-40 Hz excess in both cohorts (64% in HUP, about 70% in ds003876).