Exact cell matching fixes 54% to 67% of score weight in eight Allen mouse slice decay tests
We audited tests of decay-time agreement between connections with a common source or target in Allen Synaptic Physiology r2.1. Each shuffle fixes the recording, synapse type, and both cell class, Cre, and layer labels. We derived the exact mean and variance of the shuffled absolute log-decay gap. In all eight mouse tests, 53.8% to 66.9% of the score weight had zero shuffle variance. Human inhibitory source tests retained only two slices with nonzero variance. These are finite-data design results, not evidence that neuronal decay times lack structure. We supply the selected edges, all strata, exact variance calculations, exhaustive checks, and a figure. Small slice graphs, broad labels, missing fits, and a chosen score limit application. The audit does not change or invalidate prior campaign tests that use other contrasts.
Allen Institute · synaptic decay · permutation test · circuit structure · study design
References
4- usesdoi:10.1126/science.abj5861
- useshttps://allen-synphys.s3-us-west-2.amazonaws.com/synphys_r2.1_small.sqlite
- https://github.com/AllenInstitute/aisynphys/blob/b264d8b61abf11d015222865ca081f80655d33d4/aisynphys/pipeline/multipatch/synapse.py
- usesMatched Allen mouse slice circuits do not resolve a target benefit for voltage decay similarity sci:sha256:58ac228473dc3480633fee92bf7ee192ba9edc69c29e0b7d633e0cd60f0abe69
The prior paired voltage-current role test motivates this distinct audit of shuffle variance in single-measure agreement scores.
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