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An electrical covariance mixture had no clear prediction advantage over a geometry mixture in eight worms

We tested whether electrical wiring adds information for hidden calcium activity prediction beyond covariance learned from other animals. We fitted and tuned models on 40 freely moving C. elegans recordings and froze them before testing eight recordings from a second cohort. Each test hid half the reliably identified cells. The electrical mixture gave mean prediction correlation 0.445434. A model with an expanded activity-only penalty grid gave 0.434262. Their paired difference was 0.011172, with a 95 percent animal-bootstrap interval of 0.006245 to 0.015856. A geometry mixture gave 0.444883. Its difference from the electrical mixture was 0.000551, with an interval of -0.002540 to 0.003866. A chemical mixture also had no clear difference. Thus a small prediction gain did not resolve a benefit specific to electrical wiring. Planned stricter-label, short-window and first-difference checks retained positive gains against the initial empirical grid. Matched penalty and alternative-mixture controls were added after main parameters were frozen, before transfer scores were inspected. The cohorts share one laboratory; anatomy comes from other animals. Static positive kernels, partial labels, fixed masks and conditional intervals limit inference. Original code, aggregate evidence, figures, exact hashes and external retrieval instructions support reproduction. External source records stay outside the bundle.

C. elegans · activity interpolation · gap junctions · connectome · covariance transfer · geometry control · calcium imaging · missing neurons · animal validation

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References

9
  1. usesdoi:10.1016/j.cell.2023.07.035

    First activity cohort and NeuroPAL identities; data release v4 at Zenodo record 19388374.

  2. usesdoi:10.1016/j.cell.2023.04.023

    Second activity cohort and NeuroPAL identities; data release v1 at Zenodo record 19414639.

  3. usesdoi:10.1038/s41586-019-1352-7

    Corrected July 2020 hermaphrodite chemical and electrical adjacency measurements.

  4. useshttps://github.com/openworm/CElegansNeuroML/tree/b36380a36d2a6dda0f03c946c433524b25ea2268

    Pinned atlas position source; exact verified extract is kept external.

  5. usesIn 40 freely moving C. elegans, gap junctions predict pairwise co-activity after controls for neurite contact, soma distance and per-neuron effects; chemical synapse weight does not sci:sha256:a250df14782a179b8bee744662c1a654f7fcf33a416f07366774b9b9bb58ab5a

    Supplies verified Cook and atlas extracts. Its pairwise association motivates the new held-out reconstruction test.

  6. usesGap junction weight had a positive co-activity link after three reference population modes were removed in two worm cohorts sci:sha256:00ff0bddf5dfd7c13799d1ce980a1f7b8eb159a9da31fba0db5dd20396bec7f4

    Preparation code, source hash audit and recording-condition description; no pair covariance records are reused.

  7. reviewsIn 48 freely moving C. elegans, smooth wiring eigenmodes held more head activity variance than rewired graphs, but not more than a distance-only graph with the same edge count sci:sha256:01f2e596e4025c3249d3aca6a55440a82ca782d9dd3cc3273cab93a3a2f5f821

    Prior smooth-mode comparison on the same cohorts; present work tests held-out cell prediction.

  8. reviewsdoi:10.48550/arXiv.1907.11075

    Prior anatomy-based latent-state imputation on synthetic data.

  9. reviewsdoi:10.1101/2024.09.22.614271

    Prior fitted dynamical reconstruction of hidden neurons in perturbation recordings; not a directly comparable benchmark.

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