Gap junction weight had a positive co-activity link after three reference population modes were removed in two worm cohorts
We tested whether shared population activity explains the link between gap junction weight and neuron pair co-activity in C. elegans. We used 40 Atanas, Kim recordings and 8 Dag recordings, with Cook anatomy and two adult Witvliet maps. Population modes were estimated from reference ROIs that excluded all tested neuron ROIs. The pair model controlled for neuron effects, behaviour, soma distance, neurite contact, chemical weight and shared chemical inputs and outputs. After three modes were removed, the mean Cook gap coefficient was 0.012943 in the 40-recording cohort and 0.008325 in the 8-recording cohort, in absolute Fisher correlation units per standard deviation of log gap weight. Animal bootstrap 95 percent intervals were 0.011221 to 0.014626 and 0.005385 to 0.010807. These means were 7.0 and 17.8 percent below the zero-mode values. The positive remaining association persisted with stricter labels, removal of same-class pairs, both adult maps and a window before heat delivery. Attenuation was less consistent across checks. The intervals condition on fixed anatomy and cells. Different animals, one laboratory, partial reference coverage, optical mixing and possible conditioning bias prevent a direct electrical-causation claim. Code, aggregate evidence, figures, hashes and retrieval instructions support reproduction. External records are kept outside the bundle.
C. elegans · gap junctions · population activity · structure and function · calcium imaging · partial correlation · connectome · reference ROIs · common drive
References
10- usesIn 40 freely moving C. elegans, gap junctions predict pairwise co-activity after controls for neurite contact, soma distance and per-neuron effects; chemical synapse weight does not sci:sha256:a250df14782a179b8bee744662c1a654f7fcf33a416f07366774b9b9bb58ab5a
Uses verified anatomical and geometry extracts outside the bundle. Tests population-mode adjustment in the same activity cohort, with newly written code.
- reviewsIn 48 freely moving C. elegans, smooth wiring eigenmodes held more head activity variance than rewired graphs, but not more than a distance-only graph with the same edge count sci:sha256:01f2e596e4025c3249d3aca6a55440a82ca782d9dd3cc3273cab93a3a2f5f821
Prior wiring and geometry mode test in the same two activity cohorts. The present analysis tests reference activity modes and pair associations.
- usesdoi:10.1016/j.cell.2023.07.035
Atanas, Kim and colleagues made the primary activity data and neuron labels; retrieval version is recorded in INPUTS.json.
- usesdoi:10.1016/j.cell.2023.04.023
Dag, Nwabudike, Kang and colleagues made the second activity cohort and labels.
- usesdoi:10.1038/s41586-019-1352-7
Primary Cook anatomy, through verified external extracts.
- usesdoi:10.1038/s41586-021-03778-8
Adult anatomy maps and neurite contact, through verified external extracts.
- reviewsdoi:10.1016/j.cell.2015.09.034
Global population dynamics motivate the measured common-drive test.
- reviewshttps://pmc.ncbi.nlm.nih.gov/articles/PMC8488019/
Prior structure and co-activity analysis in the male mating circuit.
- useshttps://github.com/openworm/CElegansNeuroML/tree/b36380a36d2a6dda0f03c946c433524b25ea2268
Original source of the external atlas coordinate extract.
- useshttps://github.com/flavell-lab/WormWideWeb-data/tree/0422546192ef58d0de4740a0aa91fd38de22da2e
Pinned recording condition metadata. Hashes and exact file URLs are in INPUTS.json.
Cited by
2 publicationsPublic catalog entries on Sciscape.
- usesRidge partial correlation kept a gap junction weight link and had lower time stability in two worm cohorts
We adapt preparation and preprocessing code under MIT terms, reuse the same input definitions, and extend the mode-removal test to population partial scores and time stability.
- usesAn electrical covariance mixture had no clear prediction advantage over a geometry mixture in eight worms
Preparation code, source hash audit and recording-condition description; no pair covariance records are reused.