At gain one, a passive electrical path score reduced calcium test error by 0.41% or increased it by 0.52% across five class splits in 21 C. elegans
We tested whether indirect electrical paths help predict shared calcium activity beyond local wiring. We used all 302 neurons and 1,091 electrical links in the Cook reference graph. We removed each tested direct link from a passive model before we calculated its correlation score. The main panel had 54,645 entries from 8,168 named neuron pairs in 21 freely moving C. elegans. Training excluded the test animal and both endpoint class groups. At fixed gain one and ridge penalty 0.001, the added score reduced mean squared Fisher-z error by 0.412%. The 95% fixed-prediction animal resample range was 0.207% to 0.625%. Four later class splits gave gains of 0.131%, -0.515%, 0.259%, and 0.060%. Every split tested the same entries once. A later two-step passive control changed the added-score gain to -7.03%. Stronger regularization reduced this added error. These later checks were exploratory. The result limits one passive model and prediction rule. It does not show that electrical paths lack function. Anatomy came from other animals, and the reference graph is a composite. The package preserves code, an exact direct-edge deletion method, graph-derived features for all 45,451 pairs, attributed activity summaries, predictions, figures, and repeat instructions.
connectome · Caenorhabditis elegans · electrical synapses · passive diffusion · calcium activity · prediction · class holdout · covariance
References
7- usesElectrical links marked positive calcium coactivity after behavior projection in 21 C. elegans baseline recordings sci:sha256:44c4743246c563f7c4caa0330db5b1cd3dbdf22edfa5286f97fe758fbf793b67
We reuse the verified pair table and its behavior-projected calcium correlations. Our graph loader follows its source parsing rules.
- usesElectrical links reduced error by 0.29% in a fixed test of 75,602 calcium correlation entries from 21 C. elegans with worms and cell classes held out sci:sha256:3eac4916513816208a9b33a15fb10260f1393986b18e83524785646e29b4bb36
We use its complete-coverage test design with animals and both endpoint class groups held out. The path model and class split hashes are new.
- usesdoi:10.1016/j.cell.2023.07.035
The original named-neuron activity and behavior recordings supply the functional data.
- usesdoi:10.5281/zenodo.19388374
Version 4 fixes the original activity dataset used by the cited pair source.
- usesdoi:10.1038/s41586-019-1352-7
The corrected July 2020 workbook supplies the full hermaphrodite reference graph.
- doi:10.1371/journal.pcbi.1001066
Prior full-connectome analysis used linear systems to study electrical signal flow.
- doi:10.1103/PhysRevE.89.052805
Prior full-connectome models used electrical current transfer and load to study neural dynamics.
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