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A 128 ms window shift changed a depth model's error decrease from -6.4% to 20.1% in 178 cells from a second mouse retina

Dendrite depth gives a way to predict light-on and light-off responses from retinal anatomy. We tested transfer between two mouse retina datasets. We used 315 e2198 ganglion cells and 178 Eyewire II ganglion cells. The target was a local calcium edge index from moving-bar traces. Models used ON-side profile mass or ten depth bins. Each test retina was excluded from training and penalty selection. In the primary test, the depth model trained on e2198 increased error by 6.4% relative to the training mean in Eyewire II. Moving all local baseline and response samples 128 ms later gave a 20.1% error decrease. Conditional type ranges were -42.1% to 27.7% and -14.7% to 48.8%, respectively. Reverse transfer error decreases were 14.8% and 34.7%. An exploratory check kept the original model fixed. Moving only the test windows later changed its error decrease to 24.4%. The primary index had repeat-group correlations of 0.928 and 0.902, but errors differed between recording fields. Thus, repeat agreement and aligned anatomy did not make this structure-function score stable. These results describe a declared calcium index in two tissues. They do not select the correct biological window or identify the cause of the timing effect. The package gives code, source hashes, aggregate results, figures, and a complete repeat procedure.

retina · structure-function · external validation · calcium imaging · dendrite depth · response timing · reproducibility

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References

8
  1. usesdoi:10.1038/nature09818

    The e2198 retina supplied paired anatomy and calcium observations.

  2. usesdoi:10.1016/j.cell.2018.04.040

    The public e2198 source supplied depth profiles, types, verified cell matches, raw traces, and fitted response amplitudes.

  3. usesdoi:10.64898/2026.05.28.727403

    The pinned Eyewire II release supplied the second retina. Source data remain external under their own terms.

  4. In one mouse retina, dendrite depth predicted the polarity and part of the time course of 47 held-out ganglion cell types; bipolar-type overlap and bipolar kinetics added little sci:sha256:67b50cd7eac8ed362cb458cdee59d74b31defdd5bd3f9fbb91e3f01c79e3add7

    This earlier study tested depth prediction of excluded cell types within e2198. We test transfer to another retina and response window sensitivity.

  5. usesIn one mouse retina, starburst contact direction predicted preferred motion direction within a median 12° for 26 On-Off and 23° for 7 transient On DS ganglion cells; arbor direction did not sci:sha256:d70a5a6322e8ec3db5b80f3d7871b4207590d3517332401bc14f8d9baeda0dc2

    This study documented e2198 source formats, cell matches, and depth source locations.

  6. usesWith one input repeat, a depth prior gave no clear response forecast gain in 178 cells from one mouse retina sci:sha256:44507be3dd1460ea5a9a1d2a570b2b712c106572d03ae1d8e679fe40dc762058

    We use its MIT source retrieval code, pinned source index, selected-column content hash, and cache join checks.

  7. usesIn 147 ganglion cells from one mouse retina, depth profile similarity gave no clear added gain for movie response similarity in a ridge test with chirp and quality controls sci:sha256:6516feb16326ab25411a67d869a3c900b93ae82864aa5198756592c884df278f

    The reused source retrieval and range-reading code derives from this MIT package.

  8. usesDepth overlap gave a 1.27% mean test error decrease for residual calcium correlation in 147 ganglion cells from one mouse retina sci:sha256:a99cec2964866929c84cbb6516e2a27834de634034a5fd7f36bf9ca6c468d4c1

    The source join and trigger alignment checks build on this MIT package, as credited by SCI 82f69290.

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