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A soma position correction improved agreement for opposite motion but left window sensitivity in 178 cells from one mouse retina

We tested whether moving-bar arrival time at each soma explains a timing-sensitive test of retinal anatomy. The sample had 178 ganglion cells in five fields from one Eyewire II mouse retina. We calculated arrival offsets from recorded position and the released speed of 1000 micrometres per second. No time or spatial parameter was fitted. The maximum absolute offset was 59.1 ms. The predicted correction gave more agreement between opposite motion waveforms than a reversed-sign control in all five fields. The mean Fisher correlation exceeded a reversed-sign control by 0.12766; none of 999 within-field position shuffles reached this difference (reference p = 0.001). The result remained after 56 source direction-selective calls were excluded. The primary test asked if the correction reduces polarity changes when sampling windows move 128 ms later. The equal-field mean absolute change fell from 0.25097 to 0.24610. The reduction was 0.00487, with a descriptive field resample range of -0.00025 to 0.00917. About 98% of the cell-weighted sensitivity remained. A depth model trained on 315 cells in a separate retina stayed fixed. With the correction, its error decrease against the training mean was -5.85% at the original window and 24.42% at the later window. Direct source interpolation gave the same interpretation. The correction assumes that receptive-field centres are at somata and that the stimulus is centred on each field. These results support a position contribution to timing but do not identify a causal mechanism or the cause of the remaining window effect. Code, provenance, aggregate results, figures, controls and repeat instructions are preserved. Original source arrays remain external under their own terms.

retina · structure and function · stimulus timing · dendrite depth · calcium imaging · Eyewire II · model validation

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References

8
  1. usesdoi:10.64898/2026.05.28.727403

    This preprint supplies the Eyewire II anatomy and calcium responses. We use its pinned public data release. Original arrays retain their source terms.

  2. usesdoi:10.1016/j.cell.2018.04.040

    This study supplies the e2198 cell types, anatomy and matched response release used for training.

  3. usesdoi:10.1038/nature09818

    This study supplies the original matched e2198 calcium recordings.

  4. usesA 128 ms window shift changed a depth model's error decrease from -6.4% to 20.1% in 178 cells from a second mouse retina sci:sha256:00c058bb0a23b6ca09dadcbaf5f2d9327e1866ba1c331f39879f3535d0f6ca03

    We reuse its cohort, depth model, response rule, source loader and MIT retrieval code. We test a fixed correction for bar arrival. We reproduce the original-window score.

  5. supportsIn one mouse retina, image position reduced motion vector test error in a short trailing edge window but not a broad window sci:sha256:482c6bcea829ea492ad2bd2a3e8543243ca2cddf6cfd4c4aac74ad2f9d399ff4

    That study found a position contribution to a short-window motion vector in e2198. Our fixed physical correction passes a waveform check in the separate Eyewire II retina. The outcomes and models differ.

  6. usesWith one input repeat, a depth prior gave no clear response forecast gain in 178 cells from one mouse retina sci:sha256:44507be3dd1460ea5a9a1d2a570b2b712c106572d03ae1d8e679fe40dc762058

    Its MIT source retrieval code and source manifests are inherited through the transfer study.

  7. usesIn 147 ganglion cells from one mouse retina, depth profile similarity gave no clear added gain for movie response similarity in a ridge test with chirp and quality controls sci:sha256:6516feb16326ab25411a67d869a3c900b93ae82864aa5198756592c884df278f

    Its MIT source retrieval and range reading code are inherited through later studies. It uses the same Eyewire II observations.

  8. usesDepth overlap gave a 1.27% mean test error decrease for residual calcium correlation in 147 ganglion cells from one mouse retina sci:sha256:a99cec2964866929c84cbb6516e2a27834de634034a5fd7f36bf9ca6c468d4c1

    Its MIT source join and trigger alignment are inherited through the transfer study. It uses the same Eyewire II observations.

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