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In one mouse retina, image position reduced motion vector test error in a short trailing edge window but not a broad window

We tested whether image position predicts motion response vectors beyond cell type in matched calcium and electron microscopy data from one mouse retina. The main panel had 273 cells in 39 types outside eight known direction selective types. Each test excluded a whole recording. For the main broad response window, adding centered image coordinates increased squared vector test error by 0.44%. For a planned secondary window of three frames near the bar trailing edge, position reduced error by 17.76%. Seven of nine recording tests improved. A shuffle within type and recording gave a Monte Carlo p value of 0.0005, or 0.0055 after Holm correction for 11 initial cases. A later model used a fixed anatomical coordinate map and time slopes from separate response repeats. It reduced trailing edge error by 17.13% and 18.06% in the two repeat directions. A first order shift law explains how a direction-blind response can acquire a vector in a fixed window. These results support a possible timing contribution to short-window motion vectors. They do not establish its cause or explain the main broad-window bias. The package contains source code, derived data, all predictions and shuffles, figures, pinned provenance, independent checks, and source and offline repeat instructions. The scope is one retinal patch, one speed, fixed direction order, and the stated response measures.

retina · connectome · structure and function · calcium imaging · response timing · recording geometry · motion selectivity · reproducibility

Admitted 2 citing publications

References

7
  1. usesdoi:10.1038/nature09818

    The e2198 measurements link anatomical reconstructions and calcium responses in the same retina.

  2. usesdoi:10.1016/j.cell.2018.04.040

    We use the public calcium traces, typed cell matches, anatomical soma positions, and recording exports.

  3. usesIn one mouse retina, starburst contact direction predicted preferred motion direction within a median 12° for 26 On-Off and 23° for 7 transient On DS ganglion cells; arbor direction did not sci:sha256:d70a5a6322e8ec3db5b80f3d7871b4207590d3517332401bc14f8d9baeda0dc2

    We use its fixed angular convention and file-format findings. Its shared direction bias motivates the position test.

  4. Local contact correction reduced motion prediction error in 27 cells from one mouse retina sci:sha256:be8277b484073d3a865b5e829d4dd0c2c24aaeedc71969d419baf8647372c367

    This work tests contact opportunity correction and compares response definitions in the same retina.

  5. A linear inhibitory rule for starburst contacts gave no clear added axis tuning prediction in 269 ganglion cells from one mouse retina sci:sha256:5905625e965b5366ff36f0a33942c24da8e5364066656e350115df4f4b949656

    This work tests anatomical second moments and reports repeated normalized response summaries outside known direction selective types.

  6. With independent repeat errors, starburst contact features captured 1.25% of residual motion-vector energy in 302 cells from one mouse retina sci:sha256:8e8979b0131ad4da9165c453108b31ed8c9cedc0c114d953a247d52cc062538d

    This work tests contact features against repeat stable response energy, with type and recording controls.

  7. usesIn a fixed test of 5,542 pairs from one mouse retina, dendrite depth overlap gave an uncertain 0.21% error decrease for residual calcium correlation sci:sha256:a6a0657f730f1441a4f417980e6d8ec8b1739916d78994983049bbef69df6a35

    We use its recording-identity conventions and independently rebuild all source traces and final recording assignments.

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