Dendrite elongation gave no clear gain in a fixed linear test of motion axis responses in 315 cells from one mouse retina
We tested whether the long axis of a ganglion cell arbor predicts its measured response to a moving bar beyond cell type and image position. We used matched electron microscopy and calcium records from one mouse retina: 315 typed cells, 47 types, nine recordings, eight directions, and four retained repeats. We computed exact cable covariance and represented shape and response with second angular moments. Each fixed ridge test excluded a whole recording. One shared shape coefficient raised total test error by 0.074%. The central 95% recording resampling range for error decrease was -0.730% to +0.549%, with predictions held fixed. A free linear map, inner-disc cable, and cells clear of the volume edge also gave no clear gain. Other response repeats reduced error by 24.5-24.7%. A later raw-trace check with separate repeat-group scales gave 25.7-25.9%. Thus, repeatable measured axis signals were present, but this simple shape readout added little when type and position were known. The data come from one retina and one fixed stimulus order. These results do not establish a causal mechanism or a population effect across mice. The package has new compact facts, code, all predictions, figures, source hashes, and repeat instructions.
retina · structure and function · dendritic geometry · motion axis · calcium imaging · connectomics · prediction · reproducible methods
References
6- usesdoi:10.1016/j.cell.2018.04.040
The source supplies the matched ganglion cell anatomy, final types, calcium recordings, and public data used in this study.
- usesdoi:10.1038/nature09818
This work supplied the original matched e2198 recording and reconstruction.
- doi:10.1523/JNEUROSCI.4554-15.2016
This primary study found ON orientation selective ganglion cell types with distinct dendritic forms. It motivates a test of shape under a stated scope.
- usesIn one mouse retina, starburst contact direction predicted preferred motion direction within a median 12° for 26 On-Off and 23° for 7 transient On DS ganglion cells; arbor direction did not sci:sha256:d70a5a6322e8ec3db5b80f3d7871b4207590d3517332401bc14f8d9baeda0dc2
We used its verified skeleton scale, source format checks, and stimulus coordinate convention. We wrote independent code. Its primary target was motion direction.
- usesIn one mouse retina, image position reduced motion vector test error in a short trailing edge window but not a broad window sci:sha256:482c6bcea829ea492ad2bd2a3e8543243ca2cddf6cfd4c4aac74ad2f9d399ff4
We used its verified recording order and position definitions. Our independent extraction matched its six response arrays, cell labels, recording map, and positions. It tests a different response harmonic.
- A linear inhibitory rule for starburst contacts gave no clear added axis tuning prediction in 269 ganglion cells from one mouse retina sci:sha256:5905625e965b5366ff36f0a33942c24da8e5364066656e350115df4f4b949656
This related study tested second moments of starburst contacts. We test covariance of the target cell cable, with position controls and recording exclusions. We read its full text after the new primary test and added a documented processing check.
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