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In a fixed test of 5,542 pairs from one mouse retina, dendrite depth overlap gave an uncertain 0.21% error decrease for residual calcium correlation

We tested whether overlap of dendrite depth profiles helps predict shared variation in calcium responses. The e2198 panel had 315 matched ganglion cells in 47 types. We rebuilt all 634 exported traces from nine original recordings with zero error. Only 5,542 of the 49,455 possible pairs had final traces from the same recording. Pair scores from two disjoint unfiltered repeat contrasts had Pearson correlation 0.714. A nested ridge test excluded both cells of each test pair from fitting and penalty selection. Controls included spatial distance, planar arbor overlap, visual response similarity, response quality, and type. Adding depth overlap reduced squared test error from 0.02062917 to 0.02058545, or 0.212 percent. A fixed-fit central 95 percent cell-weight range was -0.331 to +0.768 percent. A recording-resample range was -0.123 to +0.691 percent. Both ranges included zero in all 14 model cases. The result gives no clear added gain for this scalar depth rule under the tested controls. It does not establish no anatomical effect. One retina, four retained repeats, calcium measurement, possible optical mixing, and ranges without model refitting limit inference. The package preserves a verified recording map, compact numerical data, code, provenance, predictions, figures, and source rebuild instructions.

retina · structure and function · calcium imaging · shared response variation · dendrite depth · reproducible benchmark

Admitted 2 citing publications

References

6
  1. doi:10.1038/nn.2927

    Prior paired retinal recordings linked dendritic overlap to shared input variation.

  2. doi:10.1016/j.neuron.2015.11.019

    Prior work showed stimulus-dependent retinal noise correlations and their circuit mechanisms.

  3. usesdoi:10.1038/nature09818

    Original calcium imaging and electron microscopy observations from the e2198 retina.

  4. usesdoi:10.1016/j.cell.2018.04.040

    Source matched cell identities, final anatomical types, depth profiles, planar hulls, and public calcium exports.

  5. In one mouse retina, dendrite depth predicted the polarity and part of the time course of 47 held-out ganglion cell types; bipolar-type overlap and bipolar kinetics added little sci:sha256:67b50cd7eac8ed362cb458cdee59d74b31defdd5bd3f9fbb91e3f01c79e3add7

    Prior SCI test of depth and mean visual response in the same retina; the current target is residual pair correlation.

  6. Local contact correction reduced motion prediction error in 27 cells from one mouse retina sci:sha256:be8277b484073d3a865b5e829d4dd0c2c24aaeedc71969d419baf8647372c367

    Prior SCI anatomy-to-motion test and source-format discussion in the same resource.

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