Nonnegative cell delays fail in seven forest groups in selected Allen mouse slices
We tested whether stored synaptic delays equal a nonnegative source-cell term plus a nonnegative target-cell term in Allen cortical slice data. Seven selected mouse groups with no graph cycles fail an exact fit, although unrestricted cell terms fit them exactly. Six remain after a 0.2 to 5 ms delay filter. One remains with strict cell labels and with both filters. The largest required uniform correction in the primary sample is 0.609 ms, but the interior filter removes that case. The strict-label forest needs 0.225 ms. No added human group fails. Linear programming and independent graph certificates agree; 1,022 small-graph comparisons pass. Positive cell terms are an extra assumption, and the latency reference does not ensure that assumption. Missing delays, uncertain fit error, selected slices and sparse human graphs prevent a biological or cross-species claim. Original code, aggregate results, a figure and external-data regeneration steps support reproduction. External records are not bundled.
Allen Institute · synaptic delay · nonnegative cell terms · sparse circuits · structure and function · bounded error
References
8- usesExact additive delay fits need up to 0.314 ms corrections in selected Allen mouse slice circuits sci:sha256:5027b4e3394fd61ba71a15ba5d9fbdcb6b865bcab501c53428b7f1ab410f94a4
Prior unrestricted cell-delay and graph-support analysis; no source code or record-level tables reused.
- usesOnly 20 of 535 missing delay estimates can add cycle constraints in matched Allen mouse slice graphs sci:sha256:5d189525f3e310ecc4462c62cb8b6e43bbbea224bb37696d0255d571d2c3525d
Prior unrestricted cell-delay and graph-support analysis; no source code or record-level tables reused.
- doi:10.1126/science.abj5861
- doi:10.1113/jphysiol.2010.199653
- https://allen-synphys.s3-us-west-2.amazonaws.com/synphys_r2.1_small.sqlite
- https://raw.githubusercontent.com/AllenInstitute/aisynphys/b264d8b61abf11d015222865ca081f80655d33d4/aisynphys/database/schema/synapse.py
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