With target groups fixed in 2 micrometre cubes, sites within 0.5 micrometres had extra target overlap in six of eight C. elegans brain maps
We tested whether nearby chemical synapse sites share target neurons beyond a local target-group reference. We used 14,296 retained sites in eight C. elegans brain maps from different animals. The primary panel had 7,891 site pairs and 482 source-neuron records. We assigned whole target groups among sites with the same source, 2 micrometre cube, and target number. This fixes local target counts, complete groups, and target number at each coordinate. Six maps had higher mean target-set Jaccard overlap after Holm correction across eight tests. The two adult excesses were 2.89 and 3.00 percentage points. The spatial limit removed 89.7% and 88.3% of the excess above a reference without a spatial limit. Adult excesses remained at 1.19 and 1.05 points with 1 micrometre cubes. An exact assignment sampler added a target-skeleton proximity rule in an exploratory check. A 1 micrometre rule left 1.77 and 1.96 extra points in panels of 106 and 109 adult sources. A 0.5 micrometre rule left no clear excess in smaller panels of 18 and 34 sources. Only 3 and 13 source scores had nonzero sampled variance in those smaller panels. Thus, spatial rules and assignment freedom change the result. The study measures fixed-map anatomy. It does not establish a synapse-recognition mechanism, neural function, or a population age effect. The package contains source code, derived data, source hashes, random scores, figures, and repeat instructions.
Caenorhabditis elegans · connectome · synapse location · polyadic synapse · target group · spatial control · conditional randomization · exact assignment · neurite proximity · reproducible research
References
7- usesdoi:10.1038/s41586-021-03778-8
The pinned source repository provides eight chemical synapse maps, cell definitions, ages, and skeletons.
- doi:10.1186/s12915-026-02539-1
This study established spatial synapse clusters across development and used proximal neurite controls. We test a different statistic while keeping complete target groups fixed.
- doi:10.1073/pnas.2201699120
This study reported local synapse organization in C. elegans and supplied the biological context for spatial partner structure.
- Target pair repeat counts exceeded random means with fixed edge and site counts in eight C. elegans brain maps sci:sha256:fd9de6f2f733031e639058d54b8184abce55a9ab7e3d549d16c86e8a5eb7b254
This study identified repeated targets at shared sites and the pinned primary site sources. We test overlap between different sites.
- Synaptic target pair count deviations agreed across four pairs of C. elegans brain maps under local count models sci:sha256:a9496f3f38c091814fc929418745def6ce2afc5f19de7dcab452392190e077a8
This study used local target-count controls for target groups across animals. Our whole-group moves also fix all local target-group counts.
- Normal distance rank tests gave 1.9–4.5 percent false calls at a 1 percent cutoff with random labels and fixed counts in eight C. elegans brain maps sci:sha256:49e2675b2aaaaa8db46586fb0472293e080e22f84d5d9954496187eff1d48621
This study showed that dependent synapse distances can invalidate ordinary rank tests. We randomize complete site labels and calculate map scores directly.
- usesdoi:10.2202/1544-6115.1585
We use the standard added-one Monte Carlo p value for sampled random assignments.
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