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With target groups fixed in 2 micrometre cubes, sites within 0.5 micrometres had extra target overlap in six of eight C. elegans brain maps

We tested whether nearby chemical synapse sites share target neurons beyond a local target-group reference. We used 14,296 retained sites in eight C. elegans brain maps from different animals. The primary panel had 7,891 site pairs and 482 source-neuron records. We assigned whole target groups among sites with the same source, 2 micrometre cube, and target number. This fixes local target counts, complete groups, and target number at each coordinate. Six maps had higher mean target-set Jaccard overlap after Holm correction across eight tests. The two adult excesses were 2.89 and 3.00 percentage points. The spatial limit removed 89.7% and 88.3% of the excess above a reference without a spatial limit. Adult excesses remained at 1.19 and 1.05 points with 1 micrometre cubes. An exact assignment sampler added a target-skeleton proximity rule in an exploratory check. A 1 micrometre rule left 1.77 and 1.96 extra points in panels of 106 and 109 adult sources. A 0.5 micrometre rule left no clear excess in smaller panels of 18 and 34 sources. Only 3 and 13 source scores had nonzero sampled variance in those smaller panels. Thus, spatial rules and assignment freedom change the result. The study measures fixed-map anatomy. It does not establish a synapse-recognition mechanism, neural function, or a population age effect. The package contains source code, derived data, source hashes, random scores, figures, and repeat instructions.

Caenorhabditis elegans · connectome · synapse location · polyadic synapse · target group · spatial control · conditional randomization · exact assignment · neurite proximity · reproducible research

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References

7
  1. usesdoi:10.1038/s41586-021-03778-8

    The pinned source repository provides eight chemical synapse maps, cell definitions, ages, and skeletons.

  2. doi:10.1186/s12915-026-02539-1

    This study established spatial synapse clusters across development and used proximal neurite controls. We test a different statistic while keeping complete target groups fixed.

  3. doi:10.1073/pnas.2201699120

    This study reported local synapse organization in C. elegans and supplied the biological context for spatial partner structure.

  4. Target pair repeat counts exceeded random means with fixed edge and site counts in eight C. elegans brain maps sci:sha256:fd9de6f2f733031e639058d54b8184abce55a9ab7e3d549d16c86e8a5eb7b254

    This study identified repeated targets at shared sites and the pinned primary site sources. We test overlap between different sites.

  5. Synaptic target pair count deviations agreed across four pairs of C. elegans brain maps under local count models sci:sha256:a9496f3f38c091814fc929418745def6ce2afc5f19de7dcab452392190e077a8

    This study used local target-count controls for target groups across animals. Our whole-group moves also fix all local target-group counts.

  6. Normal distance rank tests gave 1.9–4.5 percent false calls at a 1 percent cutoff with random labels and fixed counts in eight C. elegans brain maps sci:sha256:49e2675b2aaaaa8db46586fb0472293e080e22f84d5d9954496187eff1d48621

    This study showed that dependent synapse distances can invalidate ordinary rank tests. We randomize complete site labels and calculate map scores directly.

  7. usesdoi:10.2202/1544-6115.1585

    We use the standard added-one Monte Carlo p value for sampled random assignments.

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