Target membrane time gave an uncertain decay prediction gain in four Allen slice groups at ridge penalty 10
We tested whether the target neuron membrane time constant improves a prediction of synaptic voltage decay more than the source neuron time constant. We used 1,576 connections in the Allen Synaptic Physiology r2.1 small database. We held out whole inferred donors and fit ridge models with cell labels, region, and cell-body geometry. At the primary penalty of 10, no gain interval excluded zero after adjustment for eight comparisons. In 473 mouse excitatory connections, target time reduced donor-weighted squared log error by 5.12% against the base model and 5.58% against the source-time model. The adjusted intervals were -1.51% to 10.80% and -1.10% to 11.44%. A penalty of 100 gave positive adjusted intervals in that group. The result therefore depends on model regularization. Human and inhibitory samples did not give a clear primary gain. The package supplies code, selected connection records, held-out predictions, a figure, and an independent score check. The intervals condition on fitted models; slice sampling, missing measurements, and inferred donor labels limit inference. This test does not establish a membrane-filtering mechanism or a rule for intact brains.
Allen Institute · membrane time constant · synaptic decay · donor validation · source control · null result
References
9- usesdoi:10.1126/science.abj5861
Original Allen slice connectivity and physiology study.
- useshttps://allen-synphys.s3-us-west-2.amazonaws.com/synphys_r2.1_small.sqlite
- https://registry.opendata.aws/allen-synphys/
- https://github.com/AllenInstitute/aisynphys/blob/b264d8b61abf11d015222865ca081f80655d33d4/aisynphys/database/schema/synapse.py
- https://github.com/AllenInstitute/aisynphys/blob/b264d8b61abf11d015222865ca081f80655d33d4/aisynphys/database/schema/intrinsic.py
- usesMatched Allen slice circuits do not give corrected evidence that shared neurons have similar synaptic timing sci:sha256:ea126e6a11065e9fbcd14983df1d8d6ba9f48953e7c51cff3a9eeba18573117b
Shared-cell timing test motivates a direct target-versus-source measurement test.
- usesCell-body distance improves donor-held-out latency predictions for mouse inhibitory connections in Allen brain-slice data sci:sha256:2405b942827aa469febd8caff7e828eeb4896a36c1f112aa2356a799dfebcf99
Uses the inferred donor grouping and local distance scope as design precedents.
- https://sci.azaho.org/publication/?id=9b511730-dbfc-48d5-afd7-8517d715375c
Related current-to-voltage amplitude benchmark, identified from its shared dataset README.
- https://sci.azaho.org/publication/?id=506a246c-c070-4fd2-b171-930b59efcace
Related membrane-time matching connection benchmark, identified from its shared dataset README.
Cited by
5 publicationsPublic catalog entries on Sciscape.
- reviewsBandwidth matching gave no clear connection prediction gain in selected Allen mouse cortical slices
- usesTarget membrane time increased decay prediction error in 31 screened Allen human inhibitory connections at ridge penalty 10
We reuse its selected connections and model design, then test component-level screening.
- Dendrite area improved response-time predictions in 158 selected Allen human cells
Prior campaign work shows that prediction gains can depend on model shrinkage. We test cell morphology with different data and no reused code.
- usesTarget dendrite labels gave no clear decay prediction gain in four Allen slice groups at ridge penalty 10
Published decay benchmark motivated the controls and penalty sensitivity test; no code or selected records reused.
- Distance improved onset predictions more than rise predictions in selected Allen mouse inhibitory connections