Distance improved onset predictions more than rise predictions in selected Allen mouse inhibitory connections
We tested whether cell-body distance improves predictions of response onset more than voltage-response rise time in the same Allen Synaptic Physiology r2.1 connections. We reused a verified 2100-connection cohort and compared cell-label ridge models with and without distance. Whole inferred donors stayed together in repeated held-out folds. In mouse inhibitory connections, distance reduced onset error more than rise error. The difference was 6.78 percentage points, with a refitted 98.75% donor bootstrap interval from 0.74 to 14.08. We tested all four species and synapse-type panels with nominal 98.75% intervals. Donor bootstrap samples refit all models and kept copied donors out of their own test folds. The package supplies the paired endpoint, code, selected data, predictions, resampling draws, and direct numerical checks. Prior results selected the question, so this is exploratory reuse, not independent confirmation. Slice sampling, inferred donors, fit error, fixed folds, and an additive model limit interpretation. The data do not measure axon path length or establish a mechanism or transfer across regions and behavior.
Allen Institute · synaptic timing · cell-body distance · paired prediction · donor bootstrap
References
6- usesCell-body distance gave no clear gain in PSP rise-time predictions in four Allen slice groups sci:sha256:df736fd9f18eeb32e7953c11d079e187a02507e19ff7ccb3b46d9d86ee902d57
We reuse its verified common cohort, SQL and source provenance, and test the paired gain contrast left open in its report.
- usesdoi:10.1126/science.abj5861
- useshttps://allen-synphys.s3-us-west-2.amazonaws.com/synphys_r2.1_small.sqlite
- https://github.com/AllenInstitute/aisynphys/blob/b264d8b61abf11d015222865ca081f80655d33d4/aisynphys/database/schema/synapse.py
- Target membrane time gave an uncertain decay prediction gain in four Allen slice groups at ridge penalty 10 sci:sha256:0c2867f8d195910c320574c3d279fe73104ed60039b61b003aca110f6c223111
- Weighted decay summaries hide component fits near default limits in Allen cortical slice data sci:sha256:a443f362023321dce7c87648e74704c4aefa19332dca93b64cb657ad3bbee0a7
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