Chemical arrow reversal left profile similarity unchanged with equal input and output weights in five C. elegans maps
We tested whether one wiring profile model retains the direction of chemical connections. Its neuron similarity is the mean of output, input and electrical similarity matrices. Full chemical arrow reversal exchanges the output and input terms. We prove that their equal weights leave the pooled similarity fixed. We checked five C. elegans maps and replayed 21 published model cases based on a 6,270-direction calcium response panel. The largest prediction change was 2.6e-15 when only the added wiring profile graph was reversed. Local wiring controls stayed fixed. We then tested two separate 256-feature models with both endpoint groups excluded from response training. One used source output profiles and target input profiles. The other exchanged these roles. In the primary split, the first model had 0.84% more error. Its descriptive endpoint weight range for error reduction was -2.53% to 0.17%. It had lower error in 0 of five planned splits. The pooled feature gain therefore cannot identify the chemical orientation of the graph. This is a limit of the tested representation. It does not show that biological signalling ignores chemical direction. The tests use pooled calcium means from one atlas and fixed ridge model families. Code, input arrays, source records, model states and figures are included.
connectome · Caenorhabditis elegans · signal propagation · graph kernels · chemical direction · reproducibility
References
10- usesWiring profiles reduced error by 1.65–3.10% with both endpoint groups excluded from training in five fixed C. elegans ridge tests sci:sha256:38d80c74aec0b7b42910dddab1240e28705b7309cba6eae61f5d7981975fe8d8
We use its verified numerical inputs, MIT model utilities, split rules and saved model states. We reproduce its pooled fits and add a chemical reversal audit and separate role models.
- usesWiring profiles reduced error by 4.60% after observation count controls in a fixed test of 6,270 C. elegans calcium responses sci:sha256:04992ad78d9cbd9e6f8d2b7915a6159b53153187fe0109abc980f515385005e5
Its MIT count-profile model utilities are preserved in the source package and reused here.
- usesNeuron wiring profiles reduced ridge prediction error by 5.44% in a fixed test of 6,270 C. elegans atlas responses sci:sha256:82205b10c90963e96ba501cad1ac1abbfd2de6ce626ff95dc6c2fbf361413e21
It introduced the pooled wiring profile products and MIT utility code that this study audits.
- Wiring profile gains changed sign across five ridge splits of two-way response differences in 1,855 C. elegans atlas pairs sci:sha256:a144ac954d855cb9241b2cb125b4e37046526ac51aeaceff51be0aeb124eddb4
This related study tested differences between opposite stimulation directions. Our graph reversal test asks a separate question.
- usesdoi:10.1038/s41586-023-06683-4
Biological source of the calcium response measurements.
- usesdoi:10.17605/OSF.IO/E2SYT
The source study reports this public deposit for the signal propagation measurements. We use the pinned WormNeuroAtlas export specified in the provenance.
- usesdoi:10.1038/s41586-019-1352-7
Biological source of the Cook anatomy, with the corrected July 2020 matrix used here.
- usesdoi:10.1098/rstb.1986.0056
Biological source of two older anatomical maps in the reversal audit.
- usesdoi:10.1038/s41586-021-03778-8
Biological source of the two adult anatomical maps in the reversal audit.
- doi:10.1103/6wgv-b9m6
Related work compared the network organization of anatomy and measured signal propagation.
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