Keeping full cell responses raised mean odor decoder accuracy by 0.96 percentage points over one fitted component in 67 sister groups from three mice
We tested whether cells with a traced common glomerular input can be compressed to one shared response component without loss of odor decoding accuracy. We used 372 mitral or tufted cells in 67 anatomical sister groups from three anesthetized mice. Each feature was the mean calcium signal during the first two seconds after odor onset. A fixed nearest-centroid decoder trained on other repeats and tested one excluded repeat. Both models used the same cells. One kept all responses. The other kept the first principal component of the training odor means. Equal-mouse accuracy was 5.54% with full responses and 4.58% with one component, for panels of 47 or 48 odors. The increase was 0.96 percentage points. A descriptive group resampling range within these mice was 0.49 to 1.43 points. The increases were +2.10, -0.27, and +1.04 points in the three mice. Residual odor shuffles within delivery modules gave lower mean accuracy. A later pre-odor subtraction check kept a mean increase of 0.81 points, but reduced the third mouse gain to almost zero. A stationary Gaussian rank-one reference also gave a smaller mean increase. The source study already showed sister response diversity and odor decoding as cells were added. Our contribution keeps cell count fixed and tests fitted common-component compression. The results show a small loss for this compression and decoder. They do not establish the best possible code dimension, a synaptic mechanism, or a behavioral benefit. Few repeats, three mice, and baseline sensitivity limit the result. The package preserves compact data, source records, code, all predictions and controls, figures, and repeat instructions.
olfactory bulb · sister cells · structure and function · odor decoding · calcium imaging · principal component · anatomical convergence
References
5- usesdoi:10.1101/2025.04.24.650439
We analyze the measured calcium responses and anatomical sister-cell assignments. The source already showed sister diversity and odor decoding with more cells.
- usesdoi:10.5281/zenodo.15150149
Fixed source record for all original arrays and anatomical group labels. Source bytes are checked against the record checksums.
- usessci:sha256:385f19ee257a3cb771a2753ed873ca2a40daf2922921f123939d3defb320b0c8 not known to Sciscape
We verified this publication and used its compact data to audit cohort labels and response values. New means are calculated directly from original arrays. We extend the question from stable response errors to same-cell compression and odor classification.
- usesWith odor gains fitted, shared glomeruli cut mean 0 to 5 s calcium trace test error by 4.0% against plane controls in three mice sci:sha256:790915f0b5b4807c0d707a55a5837467a478fddaf44aeef5325d53073ffbb686
This earlier compact extraction and sister waveform transfer test gives data provenance and related context.
- supportsdoi:10.1038/nn.2673
Earlier physiology showed shared odor rate responses with distinct respiration-related timing among sister cells. Our test concerns slow calcium response means, not spike phase.
Cited by
3 publicationsPublic catalog entries on Sciscape.
- usesA fixed test found no clear sister cell advantage in odor response change agreement across separate intervals in two mice
This earlier study supplied compact response means through the cited repeat covariance package.
- usesA fixed covariance rule gave no clear gain in odor discrimination accuracy for 246 traced sister pairs from two mice
This study produced the compact response means and tested group response compression. We reuse those checked means for a new two-cell readout benchmark.
- usesAfter plane mean removal, traced sister cells had excess repeat correlation in two of three mouse olfactory recordings
We verified this package and used its checked compact response means. Our outcome is within-odor repeat covariance and its effect on averaging variance.