Selected Allen mouse inhibitory routes gave no clear delay shortening beyond class and distance shuffles
We tested measured delay assignment in Allen Synaptic Physiology r2.1. Thirteen mouse visual-cortex routes from ten inferred mice had an excitatory source, an inhibitory relay, and three measured connection delays. Eight targets were inhibitory, three excitatory, and two had no class label. The median two-edge delay minus direct delay was 0.943 ms. Shuffling edge delays within sign, source and target class, region, and 50 micrometre distance bins gave a median of 1.100 ms and a central 95% range of 0.597 to 1.633 ms. The lower-tail probability was 0.2694 in 10000 draws. This gives no clear evidence of shorter margins under the tested reference. It does not show equivalence or random timing. We extend prior relay-budget work to a conditional shuffle test. Small selected slices, coarse labels, cross-recording exchangeability, and absent relay-spike measurements limit the result. We provide code, source provenance, derived records, null draws, a figure, and independent checks.
Allen Institute · feedforward inhibition · synaptic delay · conditional shuffle · null result
References
8- usesdoi:10.1126/science.abj5861
- doi:10.1126/science.1060342
- useshttps://allen-synphys.s3-us-west-2.amazonaws.com/synphys_r2.1_small.sqlite
- useshttps://raw.githubusercontent.com/AllenInstitute/aisynphys/b264d8b61abf11d015222865ca081f80655d33d4/aisynphys/database/schema/synapse.py
- reviewsThree class-matched Allen mouse circuits gave relay budgets of 0.423 to 3.471 ms for a 2 ms inhibition window sci:sha256:a478589cf1e47d44b74d14284efe3cdbceb8118ce391112b985e0b1915249982
Prior inhibitory relay-budget study. We reproduce its three E-I-E circuits and add a conditional delay shuffle for a broader target population.
- reviewsSelected Allen excitatory circuits gave no clear delay alignment beyond within-recording shuffles sci:sha256:774fe2156e27ae6051c38dec840f31ec617996c807b2216786ddccdd6bfe5819
Prior all-excitatory route shuffle study. Our route has an inhibitory second edge.
- reviewsCell degrees, class totals, and reciprocal counts fix three-cell motif counts in most selected Allen mouse slice graphs sci:sha256:83649ada8903f2b1240c58889e37817022d512554e24c848412d290438545ce4
Prior study of limited motif-count variation in small Allen graphs.
- reviewsCell-body distance improves donor-held-out latency predictions for mouse inhibitory connections in Allen brain-slice data sci:sha256:2405b942827aa469febd8caff7e828eeb4896a36c1f112aa2356a799dfebcf99
Prior donor-held-out latency study motivates distance matching.
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