With two direction groups assumed and one label per graph, contact area classified 54 of 56 other hair cells in seven zebrafish neuromasts
We tested how much direction information can be read from zebrafish neuromast contact graphs with one known label per graph. A fixed spectral method assumed two direction groups. It used contact area to split all cells before reading any direction value. One cell, selected by its absolute structural score, then set the direction of the split. That cell was excluded from accuracy. In seven normal neuromasts, the method classified 54 of 56 other recorded bundle directions correctly. Equal-animal accuracy was 95.92%. Six graphs had no errors. Both errors came from WT5. Binary contacts gave 76.20% accuracy. The paired sign-flip reference gave p = 0.0625, so the small panel gives limited evidence for an area advantage across animals. Age-conditioned label shuffles gave mean accuracy 51.82%; none of 9,999 draws reached the measured score. Ribbon weights gave 53 correct tests and three unknown classes. Contact area classified all three zero-ribbon test cells correctly. Testing every possible single known label reduced equal-animal mean contact accuracy to 93.88%. Terminal omissions showed further failures. These results concern bundle direction as an indicator of mechanical sensitivity. They do not measure nerve firing or behavior. The source already established direction-specific wiring, and the spectral method is standard. The contribution is a low-label benchmark, its limits, and a reproducible package with source data, provenance, code, forecasts, controls and figures.
connectome · zebrafish · neuromast · contact area · bundle direction · spectral partition · single label · structure and function
References
7- usesdoi:10.7554/eLife.33988
Source of the neuromast anatomy and direction labels. The source already showed direction-specific contacts and synapses.
- usesdoi:10.7554/eLife.33988.007
Figure 3 source data 1, version 1, supplies the eight normal source graphs. Seven have contact areas.
- usesdoi:10.7554/eLife.33988.012
The mutant source workbook is preserved from the cache and checks the independent source reader. Mutant graphs do not enter the direction assay.
- usesWith terminal preferences from other cells, contact area predicted all 63 hair bundle directions in seven zebrafish neuromasts sci:sha256:45cd46da47baeb3e6201ddea7b8de228cee5435534c8799185d0d122862139ee
Its earlier direction benchmark motivates the new test with only one known label per graph. New inputs are read from the primary workbook.
- usesdoi:10.1109/34.868688
Established normalized spectral graph partition method.
- usesdoi:10.1145/502512.502550
Established normalized bipartite spectral method.
- doi:10.7554/eLife.35796
Prior work relates afferent selectivity to hair-cell identity and limits transfer of a binary direction rule to mutants.
Cited by
1 publicationPublic catalog entries on Sciscape.
- In three vangl2 zebrafish maps, a contact area rule from seven normal maps cut synapse log loss by 41% versus a constant rule
Earlier contact-graph direction grouping defines a distinct low-label task on the same source maps.