Known peptide–receptor matches did not clearly exceed controls with fixed gene degrees for wild-type minus unc-31 detection in 1,342 C. elegans atlas directions
We tested whether known peptide and receptor gene matches explain a difference in response detection between wild-type and unc-31 C. elegans. We joined a 302-neuron peptide network to a published signal atlas. The main test used 1,342 directed pairs with at least three finite trials in each strain. The model controlled for wiring from four anatomical exports, neuron expression groups, trial counts, soma distance and the pharynx. The peptide score had a partial correlation of 0.0326 with wild-type minus mutant detection. Controls kept each gene interaction count fixed and changed the molecular matches. The one-sided rank estimate was p = 0.137 from 1,000 control networks. The fitted effect was 0.99 percentage points per residual score standard deviation. A descriptive neuron profile weight range was -2.03 to 4.01 points. This is not an animal confidence interval. A planned check outside the pharynx gave r = 0.0629, with p = 0.050 and 0.058 in two control samples. Response size gave almost no association. These results show no clear excess for the aggregate score in the main test. They do not exclude individual peptide pathways. Detection labels do not test a response difference between strains. The package preserves the full molecular input, joined pair data, all control graphs, source hashes, code, figures and repeat instructions.
Caenorhabditis elegans · connectome · neuropeptide · UNC-31 · signal propagation · gene expression · molecular graph controls · structure and function · data integration
References
9- usesdoi:10.1038/s41586-023-06683-4
Source of wild-type and unc-31 optogenetic response atlas and the peptide-release mechanism tested by the source authors.
- usesdoi:10.17605/OSF.IO/E2SYT
Data archive for the signal propagation study; the pinned WormNeuroAtlas export defines our exact input.
- usesdoi:10.1016/j.neuron.2023.09.043
Source peptide network study; February 2024 Git update, threshold 4 expression and 500 nM molecular cutoff.
- usesdoi:10.6084/m9.figshare.c.6895870.v1
Versioned source collection for the peptide network. Exact analysis bytes are fixed by the pinned Git commit and SHA-256 records.
- usesdoi:10.1098/rstb.1986.0056
White anatomical source, accessed through pinned whole-animal and L4 exports.
- usesdoi:10.1038/s41586-021-03778-8
Witvliet adult maps 7 and 8 provide wiring controls; all path calculations remain inside one map.
- usesPredicted self-signaling pair counts fell within matched receptor profile ranges in 127 C. elegans expression groups sci:sha256:70c513a1b25c8f973e923136e6aae7e5ea6deff017b8baaf05011f76e608ea52
We reuse verified numerical binary expression, molecular pairs and the 127 groups with distinct source expression profiles.
- One gene loss removes all listed support for 5,407 multichannel connections in the 2024 short-range C. elegans peptide model sci:sha256:ca108f7e42c2e47e88eeb5d6ad7b4aaa0d7a256d19e214b2bc1d3ef954ae4367
Prior SCI analysis of gene loss in the same peptide source release. It does not test the functional strain contrast studied here.
- Pharynx controls reduced the added prediction gain from indirect walks by 89% in a fixed C. elegans atlas test sci:sha256:3d17f027f5db904dad6c633521a74f387a32e9ff999808faaca428e78f85505d
Prior SCI study motivates explicit pharynx controls in tests that link this signal atlas to wiring.
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