With equal spine weights, retained spines gave more summed binocular calcium tuning change than turnover across 13 mice
We compared spine turnover with response changes in retained spines in a defined sum of visual responses. We used 138 segment intervals from 22 cells in 13 mice in released developmental mouse visual-cortex data. Each observed spine had one coefficient. Responses used source calcium noise units and one initial spine count denominator. We split total change exactly into retained response change and the difference between formed and lost responses. Separate repeat products estimated change energy under independent repeat errors. We shared the cross term equally between the two contributions. The retained-minus-turnover difference was 0.01476 source noise standard deviation squared, with a 95% whole-mouse bootstrap interval of 0.00445 to 0.02741. Mean initial retention was 64.3%. All distinct repeats gave a difference of 0.01417 [0.00399, 0.02675]. Source-accepted trials and both age intervals also gave positive differences. The primary turnover contribution was near zero and uncertain; its accepted-trial estimate was positive. Thus, turnover was substantial but gave less measured summed tuning change than retained responses under this readout. The result does not measure synaptic currents or establish a plasticity mechanism. Date-specific scales, shared preprocessing, partial fields and 13 mice limit inference. The package preserves code, source provenance, compact input, all scores, figures and repeat instructions.
structure and function · dendritic spines · visual cortex · development · spine turnover · calcium imaging · response stability · independent repeats
References
6- usesdoi:10.1038/s41467-025-60825-y
Original measurements of tracked spine structure and visual responses, and source processing methods.
- usesdoi:10.6084/m9.figshare.28738592.v1
Version-specific dataset, file 53453786. The input was independently extracted from its pinned MATLAB bytes.
- usesdoi:10.5281/zenodo.15475970
Archived original source code; two source functions are preserved with their MIT notice for method inspection.
- usesIn 10 mice, equal mouse weights reduced the early binocular response correlation rise from 0.051 to 0.007 in 81 fixed spine pairs sci:sha256:c97d0624765e841d3140bb78b82cd769c0456156be9391a76acdff689c7019f1
Source table documentation and compact array layout guided the independent extraction. No recovered neighbor graph enters this analysis.
- usesInitial 2–5 µm neighbor links gave no clear extra agreement in five-day binocular tuning changes of retained spines in nine mice sci:sha256:93e2a297312c83411a00c531887556103d3f3205054bbdd94206d656b63f69a9
Verified compact input supplies an exact check of all 8,393 independently rebuilt endpoints. This related report tests local changes only among retained spines; the present comparison includes turnover.
- usesdoi:10.1016/j.neuroimage.2015.12.012
Established independent-partition products for noise-unbiased squared response distances. We use Euclidean products without whitening.
Cited by
3 publicationsPublic catalog entries on Sciscape.
- usesReported spine area growth had a positive relation to noise-scaled visual calcium change within fields in 13 mice
We used its method for reading the outer MATLAB table. We pulled and verified its signed archive. All 5,258 retained endpoint response arrays and masks matched its extract exactly. The new study tests area growth rather than turnover contributions.
- supportsWith three to five training repeats per direction, separate date curves raised calcium test error by 10.1% in 1,430 retained spine records from 13 mice
Prior study compared turnover with response change in retained spines. Our test asks whether separate tuning shapes improve repeat prediction.
- usesIn 13 mice, new spine groups showed no clear added match to lost calcium tuning over final spine groups with the same count
Verified compact source extract and extraction code. We add a direct lost-new tuning match test with final counts fixed.