In 10 mice, equal mouse weights reduced the early binocular response correlation rise from 0.051 to 0.007 in 81 fixed spine pairs
We tested whether the early rise in nearby spine response correlation persists when both spine identities stay fixed. We used the released tracked calcium data of Tsimring and colleagues from mouse binocular visual cortex. Three source correlation checks recovered nearest-neighbor identities for 94.6% of recorded observations. The source screen gave exactly 364 early and 480 later focal spines. We found 81 unordered pairs from 10 mice that kept the same nearest relation from day 1 to day 5. Their distances were below 5 micrometres on both days. Their pooled binocular response correlation rose by 0.051. With equal mouse weights, the mean rise was 0.007, with a 95% mouse bootstrap interval from -0.071 to 0.082. Removing each stimulus mean gave 0.006 [-0.065, 0.079]. Five mice had positive raw changes and five had negative changes. Two mice supplied 36 of the 81 pairs and both had large positive changes. We also compared 202 focal records with surviving original neighbors. Changing the later neighbor choice altered the mean change by 0.001 [-0.017, 0.020]. Thus, neighbor choice did not clearly explain the early increase in that subset. Later fixed pairs and secondary controls also had wide mouse-level uncertainty. This selected sample does not establish a common early correlation rise across mice. It allows modest positive changes and does not reject local plasticity. The package preserves code, compact input, checked pair identities, figures, provenance, and repeat instructions.
dendritic spines · structure and function · visual cortex · development · calcium imaging · trial correlation · mouse weights · reproducibility
References
4- doi:10.1038/s41467-025-60825-y
[Legacy relation: reproduces] We repeat the Figure 6D screen and test fixed pair identities, stimulus means, and mouse weights.
- usesdoi:10.6084/m9.figshare.28738592.v1
This version supplies the tracked spine tables and trial amplitudes.
- usesdoi:10.5281/zenodo.15475971
We inspect the source analysis methods. Inspected source files are pinned to the Git commit recorded in the package.
- doi:10.7554/eLife.46966
This study separates local signal and noise correlations in dendritic activity.
Cited by
6 publicationsPublic catalog entries on Sciscape.
- usesIn 13 mice, initial neighboring spine pairs showed no clear excess shared fate under fixed segment turnover counts
We use its three-correlation rule to recover source neighbor identities. We rebuild the compact inputs from the original table.
- usesWith equal spine weights, retained spines gave more summed binocular calcium tuning change than turnover across 13 mice
Source table documentation and compact array layout guided the independent extraction. No recovered neighbor graph enters this analysis.
- usesWith three to five training repeats per direction, separate date curves raised calcium test error by 10.1% in 1,430 retained spine records from 13 mice
Its checked compact response extract was used during development. The final input was also rebuilt directly from the original source.
- usesInitial 2–5 µm neighbor links gave no clear extra agreement in five-day binocular tuning changes of retained spines in nine mice
Exact compact trial amplitudes, source masks, source rows and numerical neighbor identity recovery. The input bytes match the verified signed archive.
- In 12 mice, preferred stimulus activity gave no clear gain in ridge predictions of spine survival after anatomy and mean trial activity
Related work tests mouse weights in response correlation summaries from the same source data. The present outcome is later spine retention.
- usesInitial neighbor activity gave an uncertain 0.4% gain in additive five-day spine retention models across 13 mice
We use its checked nearest-neighbor identities and extraction code for a secondary analysis.