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Chemical walk composition gave no stable gain in two ridge models of 1,342 C. elegans unc-31 responses

We tested whether chemical steps in anatomical routes help predict unc-31 calcium responses when the measured wild-type response is supplied. We used 1,342 directed C. elegans pairs with at least three finite values per strain. The Cook graph kept all 302 neuronal slots. A damped positive walk model gave expected chemical and total step counts. The baseline included cell identity, cell-specific response slopes, wiring, sampling, nonlinear response terms and total step interactions. Adding the chemical interaction reduced main ridge test error by 0.199%, but four alternate partitions gave losses. Baseline features explained 99.07% of the added predictor variance. The common penalty often missed signals added to the remaining direction. A later fit removed this overlap within each training fold and used a separate penalty. It recovered every nonzero controlled signal in three partitions. For measured responses, its gains ranged from -0.034% to +0.006% across five partitions. Its main fixed-prediction endpoint range was -0.208% to +0.071%. These are conditional atlas results, not animal confidence limits. The result limits two prediction rules. It does not identify a synaptic or peptide mechanism. Sparse mutant data, different light-train durations and missing animal IDs limit the test. The package preserves complete numerical graphs, route features, response moments, code, model states, all controlled outcomes, source hashes, figures and repeat steps. A full offline replay matched 61 numerical result files.

connectome · Caenorhabditis elegans · unc-31 · signal propagation · chemical synapse · electrical synapse · walk sensitivity · ridge regression · structure and function

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References

10
  1. usesWT responses reduced ridge test error by 5.03% beyond wiring for 1,342 matched C. elegans unc-31 responses sci:sha256:ef815d9274fdb02ca3466a04b2c17b6dea78bcd2ebed7e4d5639fc2146c1fa15

    We reuse its verified numerical response panel, complete neuronal graph extracts, source manifests and MIT source extraction code. We extend its strain transfer question with chemical walk composition and controlled fitting checks.

  2. usesdoi:10.1038/s41586-023-06683-4

    Source functional measurements in WT and unc-31, experimental protocols and prior evidence for dense-core-vesicle-dependent responses.

  3. usesdoi:10.17605/OSF.IO/E2SYT

    Original signal atlas data record. The package pins the exact WormNeuroAtlas HDF5 export commit and hashes.

  4. usesdoi:10.1038/s41586-019-1352-7

    Source Cook whole-animal hermaphrodite graph, using the workbook corrected in July 2020.

  5. usesdoi:10.1098/rstb.1986.0056

    Source anatomy for the White whole and L4 export checks.

  6. usesdoi:10.1038/s41586-021-03778-8

    Source anatomy for the two adult Witvliet export checks.

  7. doi:10.1371/journal.pbio.3003023

    Electrophysiological evidence for UNC-31 effects on evoked synaptic release motivates the chemical route question. It does not establish uniform chemical weakening in the head atlas.

  8. doi:10.1101/2024.09.22.614271

    Prior fitted dynamical modeling links anatomical paths to neural perturbation responses. We consulted preprint version 4, posted 18 May 2026.

  9. Anatomy reduced ridge test error by 4.35% in wild type and increased it by 0.98% in unc-31 for 1,342 matched C. elegans atlas pairs sci:sha256:94b719902ca9f7ce3566f097497f5496034370c4e3341b81a5ffb5a82bbb6396

    Prior matched-strain test of anatomy prediction sets the scope of the new response-conditioned route test.

  10. Peptide pair counts raised ridge test error by 0.20% for WT and unc-31 response differences in 1,342 C. elegans atlas pairs sci:sha256:420ace74dc1471ff31827379a23611523568d979e5fe8b384a687179fd3335ab

    Prior quantitative test of peptide count features for strain response differences. We test chemical walk composition instead.

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