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Reverse delay gave uncertain prediction gains at ridge penalty 10 in 230 Allen mouse reciprocal pairs

We tested whether the delay in one direction of a known reciprocal connection improves prediction of the reverse delay in excluded mouse donors. We used 230 excitatory-inhibitory pairs from 156 inferred donors in two Allen slice projects. Ridge models controlled cell labels, distance and recording conditions. At penalty 10, adding reverse delay reduced donor mean squared log error by 0.00683 for excitatory delay and changed it by -0.00061 for inhibitory delay. The 97.5% fixed-prediction donor intervals were -0.00333 to 0.01833 and -0.01969 to 0.01728. Both include zero. Penalty 100 gave a positive excitatory gain interval, so the result depends on the model. The package supplies code, cohort IDs, predictions, source hashes, uncertainty draws and independent checks. Selected slice circuits, uncertain donor labels, shared fit error and conditional intervals limit inference. The result does not show delay independence or a rule across species or regions.

Allen Institute · reciprocal connections · synaptic delay · donor validation · model sensitivity

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References

8
  1. usesdoi:10.1126/science.abj5861
  2. https://registry.opendata.aws/allen-synphys/
  3. useshttps://allen-synphys.s3-us-west-2.amazonaws.com/synphys_r2.1_small.sqlite
  4. https://github.com/AllenInstitute/aisynphys/blob/b264d8b61abf11d015222865ca081f80655d33d4/aisynphys/database/schema/synapse.py
  5. doi:10.1111/ejn.12294
  6. reviewsMatched Allen cortical recordings do not resolve a source-versus-target difference in synaptic delay similarity sci:sha256:d7a654bb28eadf49cdc150cf39cd9f7fc586ef72ed661a7eaff1b7a08e6d6a37

    Related test of shared source and target timing; reciprocal pairs are excluded from that contrast.

  7. reviewsReverse synaptic strength gives no clear prediction gain across mouse donors in Allen reciprocal-pair data sci:sha256:3660af3e941c858b081907633ca3fa44640f6d2660d32d6710e1ee9cb288fca8

    Related reverse-strength completion benchmark, with a different outcome.

  8. https://sci.azaho.org/publication/?id=e98d4e72-f83a-4216-91cd-3b2b02a6b105

    Published direction-delay comparison read in the shared dataset publication package.

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