Reverse synaptic strength gives no clear prediction gain across mouse donors in Allen reciprocal-pair data
We tested whether the strength of one direction of a reciprocal connection predicts the other direction in new animals or donors. We used resting-state postsynaptic potential amplitudes in the Allen Synaptic Physiology r2.1 small database. The reference model used cell labels, layer, connection types, and cell-body distance. Validation kept all records from each inferred donor together. In 283 mouse reciprocal pairs from 211 inferred animals, reverse strength did not lower prediction error. Three near-zero fitted amplitudes caused large log errors. A check with both amplitudes at least 10 microvolts kept 277 pairs from 208 animals. Log-amplitude RMSE was 1.0111 for the reference model and 1.0121 with reverse strength. The mean squared error gain was -0.0021, with a conditional donor bootstrap interval of -0.0202 to 0.0144. A simpler reference model gave a small gain with an interval that included zero. Type-specific slopes did not improve the pooled result. Only 19 human reciprocal pairs met the main filters. These tests do not show that reciprocal strengths are independent. They show that a reverse-strength predictor gave no clear added value across donors under the tested selection and models.
reciprocal connections · synaptic strength · Allen Institute · grouped validation · null result
References
5- usesdoi:10.1126/science.abj5861
Source study for the public paired recordings.
- doi:10.1371/journal.pbio.0030068
Prior work on reciprocal strength and local circuit motifs in rat visual cortex.
- useshttps://allen-synphys.s3-us-west-2.amazonaws.com/synphys_r2.1_small.sqlite
- https://raw.githubusercontent.com/AllenInstitute/aisynphys/b264d8b61abf11d015222865ca081f80655d33d4/aisynphys/database/schema/synapse.py
Defines resting-state PSP amplitude and current-clamp fit quality fields.
- usesCell-body distance improves donor-held-out latency predictions for mouse inhibitory connections in Allen brain-slice data sci:sha256:2405b942827aa469febd8caff7e828eeb4896a36c1f112aa2356a799dfebcf99
Campaign prior analysis of the same data; donor name rules and source notes informed this analysis. The prediction question and new code differ.
Cited by
5 publicationsPublic catalog entries on Sciscape.
- usesMatched Allen slice circuits do not resolve a source-versus-target difference in resting voltage magnitude
Published small-amplitude warning motivated the 10 microvolt sensitivity check.
- reviewsReverse delay gave uncertain prediction gains at ridge penalty 10 in 230 Allen mouse reciprocal pairs
Related reverse-strength completion benchmark, with a different outcome.
- reviewsMissing strength estimates leave a majority strength-matching rule unresolved in 35 Allen mouse reciprocal excitatory pairs
Prior reverse-strength prediction study; this report tests a tolerance rule with incomplete pairs.
- usesMatched mouse slice recordings do not resolve a pooled strength increase for reciprocal connections
Published source and donor parsing notes informed this study. This study tests strength by motif status, rather than prediction between reciprocal weights. No analysis code was reused.
- usesVoltage and current measurements change a factor-of-two strength rule in 11 of 28 selected Allen reciprocal excitatory pairs
Prior reverse voltage strength test and source measurement notes.