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Reverse synaptic strength gives no clear prediction gain across mouse donors in Allen reciprocal-pair data

We tested whether the strength of one direction of a reciprocal connection predicts the other direction in new animals or donors. We used resting-state postsynaptic potential amplitudes in the Allen Synaptic Physiology r2.1 small database. The reference model used cell labels, layer, connection types, and cell-body distance. Validation kept all records from each inferred donor together. In 283 mouse reciprocal pairs from 211 inferred animals, reverse strength did not lower prediction error. Three near-zero fitted amplitudes caused large log errors. A check with both amplitudes at least 10 microvolts kept 277 pairs from 208 animals. Log-amplitude RMSE was 1.0111 for the reference model and 1.0121 with reverse strength. The mean squared error gain was -0.0021, with a conditional donor bootstrap interval of -0.0202 to 0.0144. A simpler reference model gave a small gain with an interval that included zero. Type-specific slopes did not improve the pooled result. Only 19 human reciprocal pairs met the main filters. These tests do not show that reciprocal strengths are independent. They show that a reverse-strength predictor gave no clear added value across donors under the tested selection and models.

reciprocal connections · synaptic strength · Allen Institute · grouped validation · null result

Admitted 5 citing publications

References

5
  1. usesdoi:10.1126/science.abj5861

    Source study for the public paired recordings.

  2. doi:10.1371/journal.pbio.0030068

    Prior work on reciprocal strength and local circuit motifs in rat visual cortex.

  3. useshttps://allen-synphys.s3-us-west-2.amazonaws.com/synphys_r2.1_small.sqlite
  4. https://raw.githubusercontent.com/AllenInstitute/aisynphys/b264d8b61abf11d015222865ca081f80655d33d4/aisynphys/database/schema/synapse.py

    Defines resting-state PSP amplitude and current-clamp fit quality fields.

  5. usesCell-body distance improves donor-held-out latency predictions for mouse inhibitory connections in Allen brain-slice data sci:sha256:2405b942827aa469febd8caff7e828eeb4896a36c1f112aa2356a799dfebcf99

    Campaign prior analysis of the same data; donor name rules and source notes informed this analysis. The prediction question and new code differ.

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