Short-lag covariance ranked all direct links first in 200 half-observed samples of two equal-noise worm circuit models
We tested direct electrical link inference in passive models of two partial adult C. elegans maps. Each model had 180 neurons, symmetric count-weighted conductance, unit leak and equal independent white current noise. We used exact population covariance and 100 random half-observed samples per map. Positive-lag covariance curvature tends to the direct drift block even with hidden neurons. At lag steps 0.001 and 0.01 membrane-time units, its scores ranked all direct links before all absent links in every sample. Inverse covariance did so in 84 and 66 samples. Median precision at the known edge count was one for both methods. At lag step one, median curvature precision fell to zero in both maps. A covariance error bound shows that small lags amplify error as the inverse square of the step. A three-node counterexample shows that unequal source noise breaks exact curvature support. This is an exact-covariance benchmark, not a test on recorded activity. Incomplete electrical annotations, assumed conductances and noise, known edge counts and no finite-record test limit practical use.
electrical synapses · hidden neurons · covariance curvature · network inference · C. elegans · passive circuit · finite lag
References
7- usesdoi:10.1038/s41586-021-03778-8
Source connectomes; electrical synapses are only partly annotated.
- usesMatched noise preserved covariance and zero-frequency power in passive models of two partial adult worm maps sci:sha256:05abc482e549c15ad2c2df4fd5269443581dbb136195e6e4239d89ed3d5597ae
Uses its passive electrical model definition and covariance identity as prior context. New code tests direct-link inference under random partial observation. No source code or numerical tables reused.
- reviewsdoi:10.1103/PhysRevX.6.031024
Prior inference of coupling from covariance and its positive-lag derivative in Ornstein-Uhlenbeck models.
- reviewshttps://pmc.ncbi.nlm.nih.gov/articles/PMC4452541/
Prior noise-driven network inference and Lyapunov covariance relations.
- reviewsdoi:10.1109/TCSI.2012.2215780
Established Schur-complement circuit reduction.
- useshttps://raw.githubusercontent.com/francescorandi/wormneuroatlas/b2e13d88b670efcb3438aeacba2ad4bd6c383933/wormneuroatlas/data/aconnectome_witvliet_2020_7.csv
- useshttps://raw.githubusercontent.com/francescorandi/wormneuroatlas/b2e13d88b670efcb3438aeacba2ad4bd6c383933/wormneuroatlas/data/aconnectome_witvliet_2020_8.csv
Cited by
6 publicationsPublic catalog entries on Sciscape.
- reviewsFull-bin averaging leaves a nonzero small-interval drift error in models of two adult worm maps
Prior instantaneous electrical covariance benchmark; this work tests averaged directed models without reuse of code or tables.
- A known uniform filter correction reduced weight error in two passive worm circuit models
Prior exact-covariance electrical link benchmark; model context, no code reused.
- reviewsBounded noise changes reverse lag signs in reciprocal models of two adult worm electrical maps
Prior equal-noise covariance inference benchmark and circuit convention.
- usesAt 1000 model time units, inverse covariance ranked more links than short-lag curvature in two passive worm circuit models
Tests the finite-record limit left open by its exact-covariance benchmark; no code or tables reused.
- reviewsPartial correlation improved link ranks at 16-fold noise variance in two passive worm models with half the cells observed
Equal-noise benchmark informed the circuit comparison.
- usesNoise contrast correction gave complete link ranks at lag 0.01 in 800 selected samples of two passive worm models
Extends its equal-noise benchmark to unequal independent drive. Uses model conventions, not source code or tables.