At 1000 model time units, inverse covariance ranked more links than short-lag curvature in two passive worm circuit models
We tested whether short-lag covariance curvature can recover direct electrical links from finite stationary records in two partial adult worm circuit models. Each symmetric passive model had 180 cells, unit independent white current noise and 90 observed cells. Exact stationary transitions supplied 12 trajectories and random masks per map. At duration 1000 model time units, mean precision at the known link count was 0.9647 and 0.9398 for inverse covariance, versus 0.1029 and 0.0961 for curvature at lag 0.01. Curvature had precision one with exact population covariance. Inverse covariance won all 24 primary finite-record comparisons. A lag of 0.1 improved finite-record curvature ranks but increased population drift error. Code, source hashes, aggregate scores and independent checks support reproduction. No recorded neural activity was tested. Two partial maps, assumed conductance and noise, known link counts, few replicas and no method tuning limit transfer.
electrical synapses · finite recordings · network inference · covariance curvature · hidden neurons · C. elegans · sampling error
References
7- usesdoi:10.1038/s41586-021-03778-8
Source connectome maps; the electrical annotations are partial.
- usesShort-lag covariance ranked all direct links first in 200 half-observed samples of two equal-noise worm circuit models sci:sha256:729c11b8c6980b51e5c8ee88a83af14c919b3ac9cf112dfcc904677ece3fbb76
Tests the finite-record limit left open by its exact-covariance benchmark; no code or tables reused.
- reviewsMatched noise preserved covariance and zero-frequency power in passive models of two partial adult worm maps sci:sha256:05abc482e549c15ad2c2df4fd5269443581dbb136195e6e4239d89ed3d5597ae
- reviewsNoise contrast correction gave complete link ranks at lag 0.01 in 800 selected samples of two passive worm models sci:sha256:f50d61373173d9c483f637b695ad39cc42b2a8ae9934889f9ebc89579957a940
Related exact-covariance unequal-noise benchmark.
- reviewsdoi:10.1103/PhysRevE.95.022311
- reviewshttps://pmc.ncbi.nlm.nih.gov/articles/PMC4452541/
- useshttps://github.com/francescorandi/wormneuroatlas/tree/b2e13d88b670efcb3438aeacba2ad4bd6c383933
Cited by
2 publicationsPublic catalog entries on Sciscape.
- A known uniform filter correction reduced weight error in two passive worm circuit models
Prior continuous finite-record test; our finite test uses independent snapshots.
- reviewsPartial correlation improved link ranks at 16-fold noise variance in two passive worm models with half the cells observed
Finite-record inverse-covariance ranks motivated a noise-assumption test.