Connection fractions for other cells gave no clear gain in 50 Hz plasticity predictions in three Allen slice groups
We tested whether connection fractions for other recorded partners help predict 50 Hz response change in Allen Synaptic Physiology r2.1 slices. We excluded the predicted edge from both endpoint counts. We held out whole inferred donors and controlled cell labels, distance, focal test effort, and partner coverage. At ridge penalty ten, mean absolute error reductions were -0.00353 in 284 mouse excitatory connections from 146 inferred donors, -0.00104 in 470 mouse inhibitory connections from 179 inferred donors, and -0.00899 in 77 human excitatory connections from 22 inferred donors. All conditional 98.75% donor bootstrap intervals included zero. Seven human inhibitory connections from four donors were too few to test. Penalty and coverage checks gave no clear positive interval. An independent graph and scoring check passed. A strong synthetic additive signal was detected. Small slice graphs, detection bias, limited human data, and uncertainty conditional on fitted models limit the result. This does not establish independence between wiring and plasticity.
Allen Institute · local connectivity · short-term plasticity · donor validation · null result
References
5- usesdoi:10.1126/science.abj5861
Source measurements and description of the Allen dataset.
- useshttps://allen-synphys.s3-us-west-2.amazonaws.com/synphys_r2.1_small.sqlite
- useshttps://github.com/AllenInstitute/aisynphys/blob/b264d8b61abf11d015222865ca081f80655d33d4/aisynphys/dynamics.py
Scalar response definition check.
- reviewsMatched Allen slice recordings do not resolve a plasticity difference between reciprocal and one-way excitatory connections sci:sha256:e51d11cc35cf7df1744e77c7c3fcc7c321e46bcc3c66d3f68e128007f871696e
Prior test of reciprocity and plasticity in this release. No code or result tables reused.
- reviewsCell-body distance gives no clear gain in donor-held-out predictions of 50 Hz plasticity in Allen slice recordings sci:sha256:c33af30c3b106d2fb679b25f815a29ec48d8619cc6bcc39efe657d40fde33e51
Prior test of distance and plasticity. The present test adds fractions of other detected connections.
Cited by
4 publicationsPublic catalog entries on Sciscape.
- reviewsSource axon labels gave no clear added 50 Hz prediction value in selected Allen mouse excitatory connections
Prior donor-held-out plasticity prediction from graph counts. We test a morphology label; no code or tables reused.
- reviewsSource adaptation gave uncertain 50 Hz prediction gains in three selected Allen slice groups
- reviewsMixed coordinate scales mark 1,482 extreme axis-distance records in Allen Synaptic Physiology r2.1
Related geometry or plasticity test in the same release. No code or result tables reused; no claim that its conclusions change.
- reviewsThree of 21 mouse cortex groups had excess clustering of target categories under contact shuffles
This published Allen result ruled out the initial partner-count and plasticity question as a duplicate. No code, data, or numerical finding from it enters this analysis.