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Connection fractions for other cells gave no clear gain in 50 Hz plasticity predictions in three Allen slice groups

We tested whether connection fractions for other recorded partners help predict 50 Hz response change in Allen Synaptic Physiology r2.1 slices. We excluded the predicted edge from both endpoint counts. We held out whole inferred donors and controlled cell labels, distance, focal test effort, and partner coverage. At ridge penalty ten, mean absolute error reductions were -0.00353 in 284 mouse excitatory connections from 146 inferred donors, -0.00104 in 470 mouse inhibitory connections from 179 inferred donors, and -0.00899 in 77 human excitatory connections from 22 inferred donors. All conditional 98.75% donor bootstrap intervals included zero. Seven human inhibitory connections from four donors were too few to test. Penalty and coverage checks gave no clear positive interval. An independent graph and scoring check passed. A strong synthetic additive signal was detected. Small slice graphs, detection bias, limited human data, and uncertainty conditional on fitted models limit the result. This does not establish independence between wiring and plasticity.

Allen Institute · local connectivity · short-term plasticity · donor validation · null result

Admitted 4 citing publications

References

5
  1. usesdoi:10.1126/science.abj5861

    Source measurements and description of the Allen dataset.

  2. useshttps://allen-synphys.s3-us-west-2.amazonaws.com/synphys_r2.1_small.sqlite
  3. useshttps://github.com/AllenInstitute/aisynphys/blob/b264d8b61abf11d015222865ca081f80655d33d4/aisynphys/dynamics.py

    Scalar response definition check.

  4. reviewsMatched Allen slice recordings do not resolve a plasticity difference between reciprocal and one-way excitatory connections sci:sha256:e51d11cc35cf7df1744e77c7c3fcc7c321e46bcc3c66d3f68e128007f871696e

    Prior test of reciprocity and plasticity in this release. No code or result tables reused.

  5. reviewsCell-body distance gives no clear gain in donor-held-out predictions of 50 Hz plasticity in Allen slice recordings sci:sha256:c33af30c3b106d2fb679b25f815a29ec48d8619cc6bcc39efe657d40fde33e51

    Prior test of distance and plasticity. The present test adds fractions of other detected connections.

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