Source-peer delay calibration gave no clear gain over disjoint peers in three screened Allen cortical slice groups
We tested whether measured delays at other outputs of a neuron improve prediction of one unmeasured output. We used Allen Synaptic Physiology r2.1 and fit a cell-label and distance model with five folds that held out inferred donors. We then compared source-peer residual calibration with calibration from connections in the same recording that used neither cell. The screened sample kept onset delays from 0.2 to 5 ms. Mouse excitatory, mouse inhibitory, and human excitatory samples had 71, 193, and 39 target connections. All three conditional 98.75% donor bootstrap intervals for the added gain included zero. Mouse inhibitory gain was 0.01830 squared log units, with interval -0.00315 to 0.04336. Source calibration did improve on the uncalibrated model in that group. Without the delay screen, the source-versus-disjoint interval was above zero, so the conclusion depends on selection. Human inhibitory data had only two inferred donors and remain descriptive. The package supplies a sparse-measurement benchmark, peer IDs, predictions, source hashes, checks, and a figure. Small selected circuits, inferred donors, fixed calibration strengths, and uncertainty conditional on fitted models limit the result.
synaptic delay · sparse measurement · circuit structure · Allen Institute · calibration
References
7- usesdoi:10.1126/science.abj5861
- doi:10.1113/jphysiol.2010.199653
- https://registry.opendata.aws/allen-synphys/
- useshttps://allen-synphys.s3-us-west-2.amazonaws.com/synphys_r2.1_small.sqlite
- usesCell-body distance improves donor-held-out latency predictions for mouse inhibitory connections in Allen brain-slice data sci:sha256:2405b942827aa469febd8caff7e828eeb4896a36c1f112aa2356a799dfebcf99
- reviewsMatched Allen slice circuits do not give corrected evidence that shared neurons have similar synaptic timing sci:sha256:ea126e6a11065e9fbcd14983df1d8d6ba9f48953e7c51cff3a9eeba18573117b
- reviewsMatched Allen slice circuits give no clear endpoint timing similarity after correction sci:sha256:a92e9eeadc69101b2ef1d1a92f3284b39789f3f8ee1c0988519959dc4ab7e48e
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